Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47312 * 2 1 4 4 C 1.50698 * 109.47605 * 239.99646 * 2 1 3 5 5 H 1.08001 * 120.00203 * 275.08968 * 4 2 1 6 6 C 1.37877 * 120.00166 * 95.07789 * 4 2 1 7 7 N 1.31512 * 120.00522 * 184.91565 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.92049 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50706 * 109.47008 * 119.99799 * 2 1 3 13 13 O 1.20757 * 119.99701 * 94.99873 * 12 2 1 14 14 C 1.50700 * 120.00106 * 274.99593 * 12 2 1 15 15 H 1.09000 * 109.51989 * 35.12820 * 14 12 2 16 16 C 1.53179 * 109.52104 * 155.31530 * 14 12 2 17 17 C 1.53172 * 109.03622 * 176.89255 * 16 14 12 18 18 C 1.53101 * 109.16067 * 303.01706 * 17 16 14 19 19 O 1.42907 * 109.41373 * 57.61255 * 18 17 16 20 20 C 1.42905 * 114.09607 * 298.83991 * 19 18 17 21 21 H 1.08997 * 109.47194 * 55.04173 * 1 2 3 22 22 H 1.09005 * 109.47130 * 295.04772 * 1 2 3 23 23 H 1.08997 * 109.47279 * 175.04445 * 1 2 3 24 24 H 0.96999 * 120.00184 * 180.02562 * 7 6 4 25 25 H 1.09007 * 109.54266 * 296.75512 * 16 14 12 26 26 H 1.08994 * 109.54432 * 57.02212 * 16 14 12 27 27 H 1.08996 * 109.52579 * 183.11644 * 17 16 14 28 28 H 1.09002 * 109.58002 * 62.95486 * 17 16 14 29 29 H 1.09001 * 109.47856 * 297.62602 * 18 17 16 30 30 H 1.09003 * 109.48790 * 177.59592 * 18 17 16 31 31 H 1.09001 * 109.47769 * 301.18016 * 20 19 18 32 32 H 1.08989 * 109.47962 * 181.14090 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1342 -1.7857 -1.2294 6 6 2.3619 0.0121 -2.3575 7 7 2.7077 -0.6130 -3.4616 8 14 2.3172 1.8792 -2.3160 9 1 3.6030 2.3933 -1.7795 10 1 2.1112 2.4001 -3.6914 11 1 1.2021 2.3285 -1.4443 12 6 2.0323 -0.7104 1.2305 13 8 2.3194 -1.8821 1.1763 14 6 2.1763 0.0414 2.5286 15 1 1.3788 0.7798 2.6123 16 6 2.0914 -0.9407 3.7011 17 6 2.3165 -0.1771 5.0097 18 6 3.6686 0.5384 4.9478 19 8 3.6920 1.4129 3.8178 20 6 3.5337 0.7485 2.5625 21 1 -0.3633 0.5888 -0.8422 22 1 -0.3634 0.4351 0.9311 23 1 -0.3634 -1.0238 -0.0888 24 1 2.9398 -0.1046 -4.2544 25 1 1.1061 -1.4067 3.7158 26 1 2.8575 -1.7080 3.5902 27 1 2.3128 -0.8771 5.8452 28 1 1.5220 0.5567 5.1458 29 1 4.4660 -0.1988 4.8536 30 1 3.8153 1.1181 5.8592 31 1 4.3293 0.0140 2.4372 32 1 3.5830 1.4795 1.7556 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082580580.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -125.392183 kcal Electronic energy + Delta-G solvation = -14617.623194 eV Core-core repulsion = 12155.747010 eV Total energy + Delta-G solvation = -2461.876184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18483 -39.38184 -35.68816 -34.59496 -33.45799 -32.15919 -27.32348 -26.37735 -25.73191 -23.75092 -21.33105 -20.00267 -19.13022 -17.36973 -17.29703 -16.87991 -16.31797 -15.87887 -15.52712 -15.04167 -14.56727 -14.46142 -14.28444 -13.85752 -13.50495 -13.16156 -12.97544 -12.65534 -12.48277 -12.19560 -12.09527 -11.91194 -11.76325 -11.34450 -11.20829 -10.78465 -10.58353 -10.04459 -8.30547 -6.38310 1.18339 1.36884 1.39611 1.49659 2.34221 2.79306 3.02504 3.33589 3.69350 3.83517 3.98172 4.11236 4.20815 4.40728 4.47764 4.57049 4.63805 4.73777 4.76074 4.81858 4.90697 4.94807 5.03775 5.10894 5.17578 5.33456 5.49399 5.56988 6.15002 6.24104 6.71535 6.84945 7.26570 8.87012 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.040323 B = 0.009444 C = 0.008685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.222145 B = 2964.110758 C = 3223.218872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 H 0.072 0.928 4 C -0.520 4.520 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.941 3.059 9 H -0.259 1.259 10 H -0.287 1.287 11 H -0.227 1.227 12 C 0.374 3.626 13 O -0.493 6.493 14 C -0.169 4.169 15 H 0.123 0.877 16 C -0.112 4.112 17 C -0.145 4.145 18 C 0.048 3.952 19 O -0.386 6.386 20 C 0.078 3.922 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.268 0.732 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 7.315 17.210 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.558 4.558 5 H 0.042 0.958 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.763 3.237 9 H -0.184 1.184 10 H -0.213 1.213 11 H -0.149 1.149 12 C 0.251 3.749 13 O -0.368 6.368 14 C -0.188 4.188 15 H 0.141 0.859 16 C -0.150 4.150 17 C -0.182 4.182 18 C -0.028 4.028 19 O -0.305 6.305 20 C 0.001 3.999 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.441 6.898 17.026 18.427 hybrid contribution 0.161 -0.222 -0.966 1.004 sum -1.280 6.676 16.060 17.439 Atomic orbital electron populations 1.21757 0.94160 1.00860 1.01669 1.19764 0.96222 0.97666 0.92556 0.90976 1.21015 1.44005 0.93821 0.96982 0.95844 1.26095 0.93781 1.04659 0.94308 1.70078 1.47662 1.38486 1.02792 0.85825 0.81022 0.78510 0.78345 1.18371 1.21314 1.14922 1.25176 0.70830 0.87980 0.90959 1.90249 1.39149 1.20409 1.86958 1.22475 1.01951 1.00246 0.94143 0.85864 1.21512 1.02641 0.97100 0.93716 1.22163 0.98754 1.00361 0.96925 1.22897 0.96553 0.94109 0.89286 1.87930 1.93440 1.34830 1.14317 1.22318 0.93459 0.97003 0.87164 0.92570 0.90799 0.94663 0.92358 0.91213 0.92702 0.88545 0.89903 0.93184 0.86151 0.93712 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.16 71.98 0.66 -4.26 16 2 C -0.04 -1.92 2.23 -12.29 -0.03 -1.95 16 3 H 0.07 2.95 5.29 -2.38 -0.01 2.94 16 4 C -0.52 -30.47 8.55 25.60 0.22 -30.25 16 5 H 0.02 1.61 7.51 -2.91 -0.02 1.58 16 6 C 0.01 0.49 5.47 84.65 0.46 0.95 16 7 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 8 Si 0.94 41.78 26.99 68.60 1.85 43.63 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.23 -8.71 6.82 99.48 0.68 -8.03 16 12 C 0.37 15.60 5.38 29.10 0.16 15.75 16 13 O -0.49 -24.64 15.61 -1.44 -0.02 -24.66 16 14 C -0.17 -5.14 2.65 -11.45 -0.03 -5.17 16 15 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 16 C -0.11 -2.98 4.90 30.71 0.15 -2.83 16 17 C -0.14 -2.72 6.14 30.69 0.19 -2.53 16 18 C 0.05 0.94 6.84 72.02 0.49 1.44 16 19 O -0.39 -10.20 10.77 -148.98 -1.60 -11.80 16 20 C 0.08 2.31 6.11 72.01 0.44 2.75 16 21 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -71.86 264.22 4.29 -67.57 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.05 Total: 11.40 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 2.71 Total: -26.10 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.63 Total: -36.47 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.85 Total: 43.63 kcal Total: -71.86 4.29 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580580.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.827 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds