Wall clock time and date at job start Mon Mar 30 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99810 * 2 1 4 4 H 1.48500 * 109.46820 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46905 * 299.99528 * 3 2 1 6 6 H 1.48497 * 109.47151 * 60.00041 * 3 2 1 7 7 C 1.37878 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99827 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99939 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00046 * 179.97438 * 11 10 9 14 14 H 1.09004 * 110.43257 * 57.46468 * 13 11 10 15 15 C 1.54884 * 110.48815 * 294.78078 * 13 11 10 16 16 C 1.54895 * 102.74801 * 203.37704 * 15 13 11 17 17 C 1.54371 * 104.19646 * 37.96932 * 16 15 13 18 18 C 1.53878 * 106.54563 * 336.35049 * 17 16 15 19 19 H 1.08995 * 110.03222 * 119.35181 * 18 17 16 20 20 N 1.46905 * 110.03294 * 240.73153 * 18 17 16 21 21 H 0.97000 * 120.00415 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47490 * 59.99591 * 9 7 2 23 23 H 1.09001 * 109.46771 * 299.99062 * 9 7 2 24 24 H 0.96995 * 120.00273 * 359.97438 * 10 9 7 25 25 H 1.09006 * 110.75545 * 321.68637 * 15 13 11 26 26 H 1.08991 * 110.75961 * 84.87680 * 15 13 11 27 27 H 1.09004 * 110.48549 * 156.61967 * 16 15 13 28 28 H 1.09000 * 110.48582 * 279.26406 * 16 15 13 29 29 H 1.09005 * 110.04303 * 217.09205 * 17 16 15 30 30 H 1.08998 * 110.07290 * 95.62840 * 17 16 15 31 31 H 1.00901 * 110.99869 * 297.91023 * 20 18 17 32 32 H 1.00896 * 110.99543 * 61.86145 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0287 0.0005 14 1 3.3987 -5.9609 0.8611 15 6 3.5467 -6.0458 -1.3174 16 6 4.0022 -7.5228 -1.4188 17 6 2.7915 -8.3287 -0.9016 18 6 1.9857 -7.3782 0.0012 19 1 0.9796 -7.2480 -0.3974 20 7 1.9197 -7.9162 1.3666 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 3.1567 -3.4354 0.0002 25 1 2.9154 -5.7773 -2.1645 26 1 4.4051 -5.3776 -1.2502 27 1 4.2200 -7.7846 -2.4543 28 1 4.8744 -7.6971 -0.7887 29 1 3.1336 -9.1892 -0.3265 30 1 2.1767 -8.6591 -1.7388 31 1 1.4429 -8.8053 1.3823 32 1 2.8414 -7.9930 1.7698 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082920462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:50 Heat of formation + Delta-G solvation = -86.647608 kcal Electronic energy + Delta-G solvation = -14113.529521 eV Core-core repulsion = 11685.626179 eV Total energy + Delta-G solvation = -2427.903342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04070 -38.55859 -36.12858 -34.40648 -33.44845 -30.78152 -28.78197 -27.34946 -24.86455 -22.51841 -21.36714 -20.65162 -19.14602 -17.84280 -17.13035 -16.58817 -16.43395 -15.91386 -15.85583 -15.22642 -14.47553 -14.31182 -14.05534 -13.82363 -13.17569 -12.99064 -12.85386 -12.75298 -12.27682 -12.17243 -12.04320 -11.73394 -11.46707 -11.44548 -10.82161 -10.61542 -9.81715 -9.50302 -8.29728 -6.46834 1.42822 1.44519 1.58062 1.81099 2.32600 2.60800 3.05048 3.49947 3.54427 3.75840 4.07353 4.28127 4.41905 4.49656 4.54978 4.62259 4.74065 4.98838 5.09580 5.14143 5.17100 5.22802 5.33989 5.39485 5.49639 5.71163 5.84712 6.32110 6.64745 6.70195 6.93804 7.22961 7.52646 8.83047 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.056806 B = 0.006342 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.785227 B = 4414.025412 C = 4689.480406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.707 5.707 11 C 0.502 3.498 12 O -0.602 6.602 13 C -0.098 4.098 14 H 0.119 0.881 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.150 4.150 18 C 0.099 3.901 19 H 0.061 0.939 20 N -0.852 5.852 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.017 1.017 24 H 0.407 0.593 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.350 0.650 32 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.529 -14.337 -1.566 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.356 5.356 11 C 0.289 3.711 12 O -0.484 6.484 13 C -0.119 4.119 14 H 0.137 0.863 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.190 4.190 18 C -0.014 4.014 19 H 0.079 0.921 20 N -0.383 5.383 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.001 0.999 24 H 0.242 0.758 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.099 -13.719 -1.379 17.701 hybrid contribution 0.360 0.342 -0.313 0.587 sum 11.460 -13.378 -1.692 17.696 Atomic orbital electron populations 1.70153 1.08395 1.28542 1.50072 1.26116 0.95789 1.04062 0.93794 0.85071 0.79088 0.77089 0.77709 1.17500 1.20365 1.20428 1.21652 0.94316 0.90513 1.52788 0.89731 1.18527 0.88786 0.84621 0.93793 1.46182 1.10978 1.05534 1.72936 1.21368 0.89741 0.84989 0.74981 1.90609 1.19722 1.85437 1.52607 1.22196 0.96057 0.91662 1.02029 0.86329 1.22530 0.99237 0.99409 0.94070 1.22316 0.97679 0.92279 1.02514 1.23005 0.97499 0.98430 1.00058 1.21877 0.98693 0.91905 0.88881 0.92097 1.58672 1.25532 1.34061 1.20036 0.92233 0.99691 0.99899 0.75754 0.92727 0.88730 0.90064 0.89310 0.89672 0.91647 0.83564 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.94 9.28 25.60 0.24 -30.70 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.22 16 9 C 0.27 15.20 5.43 85.63 0.46 15.67 16 10 N -0.71 -31.40 5.54 -466.79 -2.58 -33.99 16 11 C 0.50 21.41 7.13 87.66 0.62 22.04 16 12 O -0.60 -31.97 15.42 -3.04 -0.05 -32.02 16 13 C -0.10 -2.79 2.94 -10.47 -0.03 -2.82 16 14 H 0.12 2.90 7.91 -2.38 -0.02 2.88 16 15 C -0.11 -2.54 6.31 31.89 0.20 -2.34 16 16 C -0.11 -1.74 6.83 31.71 0.22 -1.52 16 17 C -0.15 -2.72 6.58 31.36 0.21 -2.52 16 18 C 0.10 2.64 3.42 45.64 0.16 2.80 16 19 H 0.06 2.16 6.84 -2.39 -0.02 2.14 16 20 N -0.85 -20.10 9.15 -165.67 -1.52 -21.62 16 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 23 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 24 H 0.41 14.91 8.32 -92.71 -0.77 14.14 16 25 H 0.05 1.44 8.05 -2.38 -0.02 1.42 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.17 7.92 -2.38 -0.02 1.15 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.35 6.83 9.06 -89.69 -0.81 6.02 16 32 H 0.35 6.33 8.85 -89.70 -0.79 5.54 16 Total: -1.00 -74.80 269.33 -0.54 -75.34 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -1.24 Total: 23.50 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 2.54 Total: 1.16 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.81 Total: -112.86 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.80 -0.54 -75.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082920462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.312 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds