Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47216 * 269.99815 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00204 * 3 2 1 6 6 H 1.48502 * 109.46832 * 149.99915 * 3 2 1 7 7 C 1.37886 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99635 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00052 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99867 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00102 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00132 * 180.02562 * 11 10 9 14 14 H 1.09002 * 110.53814 * 298.83728 * 13 11 10 15 15 C 1.54882 * 110.48634 * 61.45330 * 13 11 10 16 16 C 1.54897 * 102.74839 * 156.62203 * 15 13 11 17 17 C 1.54266 * 104.19585 * 322.05457 * 16 15 13 18 18 C 1.53876 * 106.59498 * 23.61354 * 17 16 15 19 19 H 1.09004 * 110.02883 * 240.66672 * 18 17 16 20 20 N 1.46896 * 110.03434 * 119.28516 * 18 17 16 21 21 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46744 * 60.00222 * 9 7 2 23 23 H 1.08997 * 109.47287 * 300.00039 * 9 7 2 24 24 H 0.96998 * 120.00483 * 0.02562 * 10 9 7 25 25 H 1.08994 * 110.76048 * 38.30877 * 15 13 11 26 26 H 1.09004 * 110.75771 * 274.93271 * 15 13 11 27 27 H 1.08996 * 110.48686 * 80.73681 * 16 15 13 28 28 H 1.08997 * 110.48405 * 203.24641 * 16 15 13 29 29 H 1.09002 * 110.02848 * 142.89095 * 17 16 15 30 30 H 1.08997 * 110.03386 * 264.33139 * 17 16 15 31 31 H 1.00903 * 111.00339 * 61.44663 * 20 18 17 32 32 H 1.00902 * 111.00166 * 185.40347 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 0.0009 12 8 6.1130 -1.9000 0.0024 13 6 5.8271 -4.2426 0.0002 14 1 5.4895 -4.7680 0.8936 15 6 5.3552 -4.9837 -1.2753 16 6 6.3990 -6.1194 -1.4167 17 6 7.7303 -5.4642 -0.9944 18 6 7.3666 -4.2710 -0.0935 19 1 7.7316 -3.3441 -0.5361 20 7 7.9488 -4.4536 1.2428 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6810 0.8906 23 1 3.8752 -0.6798 -0.8894 24 1 3.3694 -3.3127 -0.0009 25 1 5.3854 -4.3214 -2.1404 26 1 4.3548 -5.3937 -1.1361 27 1 6.1538 -6.9478 -0.7522 28 1 6.4514 -6.4629 -2.4498 29 1 8.3387 -6.1789 -0.4401 30 1 8.2710 -5.1163 -1.8746 31 1 8.9558 -4.4968 1.1957 32 1 7.6472 -3.7241 1.8714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082920463.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -58.474266 kcal Electronic energy + Delta-G solvation = -14169.925809 eV Core-core repulsion = 11743.244155 eV Total energy + Delta-G solvation = -2426.681655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.70698 -37.22891 -34.34006 -32.70598 -32.24651 -29.64320 -27.45362 -26.40951 -22.57902 -21.16727 -20.17879 -19.22617 -17.52511 -16.36747 -15.81580 -15.24499 -15.05659 -14.55620 -14.36457 -13.86361 -13.55133 -13.05430 -12.43595 -12.23424 -11.86003 -11.57051 -11.20763 -11.10599 -11.01924 -10.79830 -10.75026 -10.60849 -9.98329 -9.50587 -9.17797 -8.79139 -8.60757 -8.15651 -6.22569 -4.24750 3.21250 3.26024 3.32009 3.40304 3.95923 4.32167 4.51061 4.56660 4.74977 5.01718 5.12665 5.38461 5.45205 5.55081 5.59071 5.68804 5.84793 5.90763 5.98754 6.08015 6.22201 6.31541 6.79555 7.05627 7.20547 7.22074 7.38387 7.46422 8.12655 8.51500 8.74148 8.92544 9.37653 10.89425 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052894 B = 0.006937 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.230732 B = 4035.489746 C = 4347.959122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.702 5.702 11 C 0.505 3.495 12 O -0.564 6.564 13 C -0.111 4.111 14 H 0.107 0.893 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.097 3.903 19 H 0.058 0.942 20 N -0.844 5.844 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.020 0.980 24 H 0.397 0.603 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.337 0.663 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.466 -10.503 -1.293 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.350 5.350 11 C 0.290 3.710 12 O -0.444 6.444 13 C -0.133 4.133 14 H 0.125 0.875 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.014 4.014 19 H 0.076 0.924 20 N -0.373 5.373 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.231 0.769 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.421 -10.380 -1.282 16.238 hybrid contribution 0.380 1.539 -0.131 1.590 sum 12.801 -8.841 -1.413 15.621 Atomic orbital electron populations 1.69881 1.06199 1.27420 1.49437 1.24801 0.94790 0.99156 0.93873 0.86815 0.80554 0.83273 0.79027 1.19866 1.20858 1.18585 1.21100 0.88526 0.95240 1.53287 0.90223 1.19490 0.95272 0.78840 0.96676 1.46177 1.05762 1.10956 1.72079 1.20496 0.83127 0.90698 0.76695 1.90619 1.55605 1.46475 1.51731 1.22212 0.96162 0.93957 1.00936 0.87525 1.22458 0.99228 0.96995 0.96514 1.22286 0.94486 0.97705 1.01091 1.22214 0.97860 0.97155 0.98511 1.21840 0.92582 0.97515 0.89504 0.92363 1.58970 1.13478 1.54469 1.10425 0.92253 0.95796 0.96249 0.76947 0.90908 0.90521 0.91277 0.91589 0.90937 0.91980 0.85117 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.46 4.50 -5.20 -0.02 5.44 16 10 N -0.70 -14.40 5.49 -61.47 -0.34 -14.74 16 11 C 0.50 9.69 7.15 -10.99 -0.08 9.61 16 12 O -0.56 -12.78 15.46 5.55 0.09 -12.70 16 13 C -0.11 -1.60 2.92 -90.12 -0.26 -1.86 16 14 H 0.11 1.47 8.05 -51.93 -0.42 1.05 16 15 C -0.11 -1.39 6.26 -24.74 -0.15 -1.55 16 16 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 17 C -0.12 -1.30 6.58 -25.61 -0.17 -1.46 16 18 C 0.10 1.30 3.38 -66.59 -0.23 1.08 16 19 H 0.06 0.92 6.91 -51.93 -0.36 0.56 16 20 N -0.84 -10.17 9.10 -3.72 -0.03 -10.20 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 24 H 0.40 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.07 0.96 8.05 -51.93 -0.42 0.55 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.34 3.38 9.06 -39.29 -0.36 3.02 16 32 H 0.34 4.42 9.03 -39.29 -0.35 4.06 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -31.30 265.95 -6.39 -37.69 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.69 Total: 8.21 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.52 Total: -3.37 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.40 Total: -50.74 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.30 -6.39 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082920463.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.784 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds