Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47216 * 269.99815 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00204 * 3 2 1 6 6 H 1.48502 * 109.46832 * 149.99915 * 3 2 1 7 7 C 1.37886 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99635 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00052 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99867 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00102 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00132 * 180.02562 * 11 10 9 14 14 H 1.09002 * 110.53814 * 298.83728 * 13 11 10 15 15 C 1.54882 * 110.48634 * 61.45330 * 13 11 10 16 16 C 1.54897 * 102.74839 * 156.62203 * 15 13 11 17 17 C 1.54266 * 104.19585 * 322.05457 * 16 15 13 18 18 C 1.53876 * 106.59498 * 23.61354 * 17 16 15 19 19 H 1.09004 * 110.02883 * 240.66672 * 18 17 16 20 20 N 1.46896 * 110.03434 * 119.28516 * 18 17 16 21 21 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46744 * 60.00222 * 9 7 2 23 23 H 1.08997 * 109.47287 * 300.00039 * 9 7 2 24 24 H 0.96998 * 120.00483 * 0.02562 * 10 9 7 25 25 H 1.08994 * 110.76048 * 38.30877 * 15 13 11 26 26 H 1.09004 * 110.75771 * 274.93271 * 15 13 11 27 27 H 1.08996 * 110.48686 * 80.73681 * 16 15 13 28 28 H 1.08997 * 110.48405 * 203.24641 * 16 15 13 29 29 H 1.09002 * 110.02848 * 142.89095 * 17 16 15 30 30 H 1.08997 * 110.03386 * 264.33139 * 17 16 15 31 31 H 1.00903 * 111.00339 * 61.44663 * 20 18 17 32 32 H 1.00902 * 111.00166 * 185.40347 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 0.0009 12 8 6.1130 -1.9000 0.0024 13 6 5.8271 -4.2426 0.0002 14 1 5.4895 -4.7680 0.8936 15 6 5.3552 -4.9837 -1.2753 16 6 6.3990 -6.1194 -1.4167 17 6 7.7303 -5.4642 -0.9944 18 6 7.3666 -4.2710 -0.0935 19 1 7.7316 -3.3441 -0.5361 20 7 7.9488 -4.4536 1.2428 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6810 0.8906 23 1 3.8752 -0.6798 -0.8894 24 1 3.3694 -3.3127 -0.0009 25 1 5.3854 -4.3214 -2.1404 26 1 4.3548 -5.3937 -1.1361 27 1 6.1538 -6.9478 -0.7522 28 1 6.4514 -6.4629 -2.4498 29 1 8.3387 -6.1789 -0.4401 30 1 8.2710 -5.1163 -1.8746 31 1 8.9558 -4.4968 1.1957 32 1 7.6472 -3.7241 1.8714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082920463.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -83.055480 kcal Electronic energy + Delta-G solvation = -14170.991731 eV Core-core repulsion = 11743.244155 eV Total energy + Delta-G solvation = -2427.747576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11995 -38.48443 -36.20000 -34.48859 -33.51198 -31.05373 -29.15937 -27.39718 -24.43286 -22.54240 -21.39470 -20.53347 -19.21545 -18.08320 -17.17657 -16.62035 -16.34512 -16.24580 -15.85218 -15.19384 -14.80880 -14.60362 -14.34366 -13.95994 -13.20103 -12.99471 -12.75990 -12.58047 -12.09194 -11.99030 -11.97716 -11.85855 -11.67960 -11.44528 -10.94481 -10.75872 -9.97860 -9.62848 -8.42367 -6.49537 1.30042 1.32349 1.44659 1.67507 2.25459 2.43110 2.92731 3.47707 3.58307 3.67284 4.00571 4.28344 4.47310 4.50156 4.52536 4.72574 4.76729 4.85017 4.98636 5.04727 5.13741 5.19894 5.22561 5.26453 5.43994 5.49521 6.05953 6.19462 6.51097 6.54489 6.80439 7.12692 7.35984 8.72415 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052894 B = 0.006937 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.230732 B = 4035.489746 C = 4347.959122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.702 5.702 11 C 0.504 3.496 12 O -0.600 6.600 13 C -0.103 4.103 14 H 0.119 0.881 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.114 4.114 18 C 0.096 3.904 19 H 0.029 0.971 20 N -0.839 5.839 21 H 0.273 0.727 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.408 0.592 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.349 0.651 32 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -11.562 -1.506 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.351 5.351 11 C 0.292 3.708 12 O -0.482 6.482 13 C -0.124 4.124 14 H 0.137 0.863 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.016 4.016 19 H 0.047 0.953 20 N -0.369 5.369 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.244 0.756 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.603 -11.477 -1.499 17.861 hybrid contribution 0.013 1.821 -0.051 1.821 sum 13.616 -9.657 -1.549 16.765 Atomic orbital electron populations 1.69978 1.07646 1.28651 1.50566 1.25598 0.95548 1.02632 0.93545 0.85862 0.79190 0.79401 0.79459 1.18963 1.19618 1.18696 1.21289 0.89892 0.94642 1.52756 0.92212 1.19094 0.93460 0.81201 0.95496 1.46048 1.06827 1.09603 1.72634 1.21354 0.82017 0.92527 0.74928 1.90600 1.56299 1.48264 1.53027 1.22246 0.96973 0.90496 1.02705 0.86302 1.22511 1.00780 0.97331 0.94608 1.22281 0.92927 0.96976 1.02569 1.22196 0.98568 0.96179 0.98262 1.21837 0.91733 0.97588 0.90429 0.95305 1.59000 1.14484 1.53868 1.09515 0.91783 0.97117 0.97223 0.75624 0.92188 0.89209 0.90006 0.89824 0.89671 0.91368 0.83756 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.03 1.55 5.47 84.66 0.46 2.01 16 3 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 7 C -0.55 -30.57 9.83 25.60 0.25 -30.32 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 9 C 0.23 11.55 4.50 85.63 0.38 11.94 16 10 N -0.70 -28.68 5.49 -466.79 -2.56 -31.24 16 11 C 0.50 19.16 7.15 87.66 0.63 19.79 16 12 O -0.60 -27.33 15.46 -3.05 -0.05 -27.37 16 13 C -0.10 -2.80 2.92 -10.47 -0.03 -2.83 16 14 H 0.12 3.01 8.05 -2.39 -0.02 2.99 16 15 C -0.11 -2.55 6.26 31.89 0.20 -2.35 16 16 C -0.11 -1.88 6.83 31.67 0.22 -1.66 16 17 C -0.11 -2.15 6.58 31.32 0.21 -1.95 16 18 C 0.10 2.43 3.38 45.64 0.15 2.59 16 19 H 0.03 0.91 6.91 -2.38 -0.02 0.89 16 20 N -0.84 -18.81 9.10 -165.67 -1.51 -20.32 16 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 22 H 0.01 0.57 7.20 -2.38 -0.02 0.56 16 23 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 24 H 0.41 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 26 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.42 7.92 -2.39 -0.02 1.41 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.35 6.36 9.06 -89.69 -0.81 5.55 16 32 H 0.34 8.34 9.03 -89.69 -0.81 7.53 16 Total: -1.00 -66.73 265.95 -0.77 -67.49 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -1.31 Total: 23.34 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 2.47 Total: -2.78 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.77 Total: -106.98 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -66.73 -0.77 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082920463.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds