Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47087 * 269.99590 * 3 2 1 5 5 H 1.48504 * 109.47233 * 29.99735 * 3 2 1 6 6 H 1.48495 * 109.47287 * 149.99773 * 3 2 1 7 7 C 1.37871 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00235 * 180.27678 * 10 9 7 12 12 O 1.21279 * 119.99957 * 359.72306 * 11 10 9 13 13 C 1.50705 * 120.00418 * 179.72712 * 11 10 9 14 14 H 1.09003 * 110.01061 * 333.39806 * 13 11 10 15 15 C 1.54265 * 110.03360 * 211.95660 * 13 11 10 16 16 C 1.54883 * 104.19607 * 217.10040 * 15 13 11 17 17 C 1.54892 * 102.74843 * 37.94341 * 16 15 13 18 18 C 1.53873 * 110.03228 * 94.78556 * 13 11 10 19 19 H 1.09000 * 110.03337 * 238.56923 * 18 13 11 20 20 N 1.46900 * 110.03439 * 0.02562 * 18 13 11 21 21 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47703 * 59.99682 * 9 7 2 23 23 H 1.08999 * 109.47014 * 299.99876 * 9 7 2 24 24 H 0.97003 * 120.00238 * 359.97438 * 10 9 7 25 25 H 1.08998 * 110.48828 * 335.78262 * 15 13 11 26 26 H 1.09007 * 110.48382 * 98.42101 * 15 13 11 27 27 H 1.08997 * 110.76123 * 279.62772 * 16 15 13 28 28 H 1.09007 * 110.91405 * 156.32890 * 16 15 13 29 29 H 1.09000 * 110.48945 * 203.37262 * 17 16 15 30 30 H 1.09007 * 110.59728 * 80.79051 * 17 16 15 31 31 H 1.00899 * 110.99692 * 173.74011 * 20 18 13 32 32 H 1.00897 * 110.99703 * 297.69956 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7539 -4.8833 -0.0051 12 8 0.5615 -5.1050 -0.0051 13 6 2.7332 -6.0288 -0.0113 14 1 3.6713 -5.7150 -0.4692 15 6 2.1413 -7.2259 -0.7836 16 6 2.6277 -8.4658 0.0069 17 6 2.5377 -7.9901 1.4782 18 6 2.9852 -6.5146 1.4268 19 1 4.0457 -6.4376 1.6665 20 7 2.1950 -5.7162 2.3734 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 3.1567 -3.4354 0.0002 25 1 1.0524 -7.1778 -0.7857 26 1 2.5249 -7.2491 -1.8036 27 1 3.6559 -8.7132 -0.2568 28 1 1.9707 -9.3187 -0.1642 29 1 3.2105 -8.5711 2.1089 30 1 1.5135 -8.0656 1.8437 31 1 2.2696 -6.0865 3.3091 32 1 2.4698 -4.7458 2.3455 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082920464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = -56.125252 kcal Electronic energy + Delta-G solvation = -14298.237388 eV Core-core repulsion = 11871.657594 eV Total energy + Delta-G solvation = -2426.579794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56764 -36.88716 -34.03377 -32.59308 -32.15746 -29.30686 -27.01968 -26.19769 -22.86551 -20.74172 -20.57718 -18.88326 -17.06989 -16.21785 -15.49029 -15.28985 -14.96724 -14.62083 -13.90997 -13.70927 -13.48426 -12.88591 -11.98841 -11.83849 -11.57362 -11.33175 -11.08182 -10.99346 -10.89866 -10.83804 -10.75933 -10.43360 -10.26433 -9.33512 -8.84033 -8.67711 -8.41599 -7.73488 -6.12278 -4.18896 3.25835 3.31880 3.34133 3.58557 4.19299 4.41584 4.61617 4.65391 4.79193 5.16269 5.23537 5.39722 5.52576 5.56186 5.70503 5.76124 5.85014 5.95839 6.07927 6.17277 6.28978 6.55612 7.34160 7.42084 7.58906 7.60236 7.64354 7.75281 8.04085 8.75942 8.88052 9.29854 9.49264 10.97916 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061504 B = 0.006557 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.144779 B = 4269.039519 C = 4351.414958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.252 3.748 10 N -0.721 5.721 11 C 0.521 3.479 12 O -0.542 6.542 13 C -0.113 4.113 14 H 0.081 0.919 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.118 4.118 18 C 0.102 3.898 19 H 0.038 0.962 20 N -0.838 5.838 21 H 0.265 0.735 22 H 0.023 0.977 23 H 0.027 0.973 24 H 0.385 0.615 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.337 0.663 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -12.826 1.932 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.131 3.869 10 N -0.370 5.370 11 C 0.306 3.694 12 O -0.419 6.419 13 C -0.136 4.136 14 H 0.099 0.901 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.010 4.010 19 H 0.056 0.944 20 N -0.370 5.370 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.217 0.783 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.056 -13.035 1.503 14.898 hybrid contribution 1.900 1.365 0.475 2.387 sum 8.956 -11.670 1.978 14.843 Atomic orbital electron populations 1.69981 1.06080 1.27176 1.49053 1.24949 0.94886 0.99372 0.94831 0.86443 0.79595 0.82836 0.78173 1.20518 1.21037 1.19841 1.21248 0.93163 0.90641 1.52962 0.92092 1.19025 0.88320 0.81945 0.97586 1.46496 1.10573 1.06322 1.73623 1.19916 0.89255 0.83664 0.76592 1.90600 1.16841 1.84484 1.50005 1.22077 0.98887 0.96082 0.96515 0.90058 1.22307 1.02780 0.92065 0.97586 1.22422 1.00763 0.97740 0.94904 1.22449 1.02352 0.93886 0.96951 1.21833 0.94155 0.93661 0.91320 0.94404 1.58771 1.61278 1.06673 1.10293 0.92519 0.95922 0.95535 0.78303 0.89357 0.91761 0.91807 0.91372 0.92137 0.90139 0.85001 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.80 5.43 -5.20 -0.03 6.77 16 10 N -0.72 -15.43 5.34 -61.47 -0.33 -15.76 16 11 C 0.52 10.73 5.04 -10.98 -0.06 10.67 16 12 O -0.54 -13.55 15.75 5.56 0.09 -13.46 16 13 C -0.11 -1.72 3.29 -90.65 -0.30 -2.02 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.11 -1.53 6.31 -25.08 -0.16 -1.69 16 16 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 17 C -0.12 -1.39 6.49 -25.07 -0.16 -1.55 16 18 C 0.10 1.36 4.02 -66.59 -0.27 1.10 16 19 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 20 N -0.84 -12.61 8.08 -3.72 -0.03 -12.64 16 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.39 7.13 8.32 -40.82 -0.34 6.79 16 25 H 0.09 1.49 6.90 -51.93 -0.36 1.13 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.34 4.16 9.02 -39.29 -0.35 3.81 16 32 H 0.35 5.60 8.08 -39.29 -0.32 5.28 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -32.31 266.93 -6.79 -39.11 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.70 Total: 10.17 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.56 Total: -1.72 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.38 Total: -54.11 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.31 -6.79 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082920464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.018 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds