Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 14 14 C 1.53007 * 109.47063 * 300.00464 * 12 10 9 15 15 C 1.52995 * 109.46927 * 179.97438 * 14 12 10 16 16 C 1.52990 * 109.47353 * 59.99689 * 15 14 12 17 17 C 1.52999 * 109.47464 * 300.00249 * 16 15 14 18 18 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 19 19 H 1.09011 * 109.47182 * 60.00188 * 18 12 10 20 20 N 1.46897 * 109.47531 * 300.00429 * 18 12 10 21 21 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.46582 * 300.00001 * 14 12 10 24 24 H 1.09001 * 109.46852 * 59.99630 * 14 12 10 25 25 H 1.09002 * 109.47128 * 299.99281 * 15 14 12 26 26 H 1.08998 * 109.46818 * 180.02562 * 15 14 12 27 27 H 1.09007 * 109.47253 * 179.97438 * 16 15 14 28 28 H 1.09005 * 109.46920 * 60.00358 * 16 15 14 29 29 H 1.09003 * 109.46364 * 299.99483 * 17 16 15 30 30 H 1.09001 * 109.47411 * 180.02562 * 17 16 15 31 31 H 1.00901 * 111.00372 * 180.02562 * 20 18 12 32 32 H 1.00910 * 110.99696 * 303.95160 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.6164 -4.9162 -0.9030 14 6 0.3643 -4.9503 1.2362 15 6 -0.4012 -6.2750 1.2295 16 6 0.5925 -7.4382 1.2229 17 6 1.4717 -7.3509 -0.0262 18 6 2.2376 -6.0259 -0.0186 19 1 2.8643 -5.9725 0.8717 20 7 3.0822 -5.9424 -1.2176 21 1 -0.4850 0.8401 0.0004 22 1 0.3532 -2.3907 -0.0005 23 1 0.9913 -4.8970 2.1262 24 1 -0.3440 -4.1217 1.2406 25 1 -1.0283 -6.3277 0.3395 26 1 -1.0279 -6.3369 2.1191 27 1 0.0471 -8.3820 1.2186 28 1 1.2195 -7.3854 2.1130 29 1 0.8446 -7.4038 -0.9162 30 1 2.1794 -8.1799 -0.0311 31 1 3.7476 -6.7004 -1.2448 32 1 2.5201 -5.9249 -2.0554 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -60.136016 kcal Electronic energy + Delta-G solvation = -14559.504850 eV Core-core repulsion = 12132.751136 eV Total energy + Delta-G solvation = -2426.753713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.26998 -36.88828 -33.87109 -33.07039 -31.29991 -30.31296 -27.72374 -24.88740 -22.79200 -21.53897 -19.90516 -18.81448 -17.74250 -15.92835 -15.36961 -15.01865 -14.33276 -14.29190 -13.72377 -13.44095 -13.38403 -12.73637 -12.49167 -12.08371 -11.82523 -11.37686 -11.07089 -10.96879 -10.84490 -10.59620 -10.31722 -10.25305 -10.15531 -9.86645 -9.35259 -8.21440 -7.88861 -7.77969 -6.28461 -3.67749 3.24309 3.33551 3.41527 4.11219 4.27986 4.78502 4.81772 4.93200 5.24590 5.28397 5.35058 5.45542 5.62309 5.64302 5.68614 5.79266 5.87660 6.04246 6.18539 6.24783 6.28248 6.39851 6.46641 6.69346 6.75804 7.65749 7.67905 7.90438 8.22084 8.79371 9.34287 9.73338 10.27806 10.90132 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049658 B = 0.008079 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.717246 B = 3465.071707 C = 3871.116497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.018 3.982 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.292 4.292 8 H 0.101 0.899 9 N -0.574 5.574 10 C 0.455 3.545 11 O -0.565 6.565 12 C -0.092 4.092 13 H 0.075 0.925 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.155 4.155 18 C 0.120 3.880 19 H 0.082 0.918 20 N -0.821 5.821 21 H 0.268 0.732 22 H 0.389 0.611 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.331 0.669 32 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -12.416 0.781 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.183 4.183 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.422 4.422 8 H 0.119 0.881 9 N -0.212 5.212 10 C 0.240 3.760 11 O -0.447 6.447 12 C -0.114 4.114 13 H 0.094 0.906 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.194 4.194 18 C 0.007 3.993 19 H 0.100 0.900 20 N -0.347 5.347 21 H 0.078 0.922 22 H 0.222 0.778 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.367 -11.532 1.070 11.662 hybrid contribution -0.757 -0.068 -0.311 0.821 sum -2.124 -11.600 0.759 11.817 Atomic orbital electron populations 1.69627 1.05849 1.27664 1.51819 1.25209 0.95598 0.99501 0.97946 0.85849 0.79718 0.81515 0.77551 1.19334 1.20929 1.20936 1.19746 0.93306 0.82471 1.46671 0.88084 1.41911 1.08979 1.04600 1.65665 1.19712 0.88278 0.84430 0.83565 1.90545 1.13511 1.86887 1.53757 1.21233 0.96582 0.94842 0.98785 0.90638 1.21532 0.98358 0.97346 0.97677 1.21554 0.97629 0.94703 1.01674 1.21470 0.97714 0.97993 0.98151 1.22519 0.99241 0.99179 0.98506 1.21132 0.92542 0.90869 0.94729 0.90029 1.58669 1.20328 1.52129 1.03607 0.92208 0.77750 0.91600 0.91020 0.92094 0.92017 0.92544 0.91947 0.92344 0.92418 0.85720 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.45 13.05 55.50 0.72 -24.73 16 2 C 0.02 0.49 5.50 -17.46 -0.10 0.40 16 3 Si 0.93 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.29 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.57 -15.05 5.18 -10.96 -0.06 -15.10 16 10 C 0.46 11.07 6.94 -10.98 -0.08 11.00 16 11 O -0.57 -15.78 14.78 5.55 0.08 -15.70 16 12 C -0.09 -1.67 2.18 -91.77 -0.20 -1.87 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.11 -1.76 5.10 -26.73 -0.14 -1.89 16 15 C -0.12 -1.46 5.92 -26.74 -0.16 -1.62 16 16 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 17 C -0.15 -1.89 5.49 -26.71 -0.15 -2.04 16 18 C 0.12 1.93 2.25 -67.70 -0.15 1.78 16 19 H 0.08 1.48 8.10 -51.92 -0.42 1.06 16 20 N -0.82 -13.45 8.05 -4.65 -0.04 -13.49 16 21 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.39 9.85 7.32 -40.82 -0.30 9.55 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.19 7.56 -51.93 -0.39 0.80 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.33 4.54 9.04 -39.29 -0.36 4.19 16 32 H 0.33 4.94 8.98 -39.29 -0.35 4.59 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -31.82 262.52 -6.34 -38.16 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.27 Total: -4.31 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.63 Total: -53.32 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.08 Total: -15.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.82 -6.34 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.975 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds