Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 14 14 C 1.53007 * 109.47063 * 300.00464 * 12 10 9 15 15 C 1.52995 * 109.46927 * 179.97438 * 14 12 10 16 16 C 1.52990 * 109.47353 * 59.99689 * 15 14 12 17 17 C 1.52999 * 109.47464 * 300.00249 * 16 15 14 18 18 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 19 19 H 1.09011 * 109.47182 * 60.00188 * 18 12 10 20 20 N 1.46897 * 109.47531 * 300.00429 * 18 12 10 21 21 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.46582 * 300.00001 * 14 12 10 24 24 H 1.09001 * 109.46852 * 59.99630 * 14 12 10 25 25 H 1.09002 * 109.47128 * 299.99281 * 15 14 12 26 26 H 1.08998 * 109.46818 * 180.02562 * 15 14 12 27 27 H 1.09007 * 109.47253 * 179.97438 * 16 15 14 28 28 H 1.09005 * 109.46920 * 60.00358 * 16 15 14 29 29 H 1.09003 * 109.46364 * 299.99483 * 17 16 15 30 30 H 1.09001 * 109.47411 * 180.02562 * 17 16 15 31 31 H 1.00901 * 111.00372 * 180.02562 * 20 18 12 32 32 H 1.00910 * 110.99696 * 303.95160 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.6164 -4.9162 -0.9030 14 6 0.3643 -4.9503 1.2362 15 6 -0.4012 -6.2750 1.2295 16 6 0.5925 -7.4382 1.2229 17 6 1.4717 -7.3509 -0.0262 18 6 2.2376 -6.0259 -0.0186 19 1 2.8643 -5.9725 0.8717 20 7 3.0822 -5.9424 -1.2176 21 1 -0.4850 0.8401 0.0004 22 1 0.3532 -2.3907 -0.0005 23 1 0.9913 -4.8970 2.1262 24 1 -0.3440 -4.1217 1.2406 25 1 -1.0283 -6.3277 0.3395 26 1 -1.0279 -6.3369 2.1191 27 1 0.0471 -8.3820 1.2186 28 1 1.2195 -7.3854 2.1130 29 1 0.8446 -7.4038 -0.9162 30 1 2.1794 -8.1799 -0.0311 31 1 3.7476 -6.7004 -1.2448 32 1 2.5201 -5.9249 -2.0554 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -84.037062 kcal Electronic energy + Delta-G solvation = -14560.541277 eV Core-core repulsion = 12132.751136 eV Total energy + Delta-G solvation = -2427.790141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82712 -38.53384 -35.88704 -34.39359 -33.22594 -31.77644 -28.96045 -26.91069 -24.15609 -22.78909 -21.15882 -20.53716 -19.82158 -17.68030 -16.86612 -16.52749 -16.10569 -15.62288 -15.45978 -14.92084 -14.60991 -14.34382 -13.78596 -13.69405 -13.25526 -13.11166 -12.87446 -12.36730 -12.17994 -12.10611 -12.06044 -11.77030 -11.47598 -11.41467 -11.07827 -10.07597 -9.91476 -9.22869 -8.41788 -5.89207 1.37519 1.40928 1.55769 2.18959 2.32677 3.24023 3.26876 3.65377 3.78288 3.97296 4.17886 4.27752 4.34237 4.44838 4.51469 4.57870 4.67147 4.91708 4.96026 5.18233 5.21249 5.23704 5.31596 5.35517 5.45825 5.54654 6.06870 6.46642 6.68098 6.78466 7.20844 7.67104 8.25702 8.76488 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049658 B = 0.008079 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.717246 B = 3465.071707 C = 3871.116497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.017 4.017 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.583 5.583 10 C 0.450 3.550 11 O -0.606 6.606 12 C -0.083 4.083 13 H 0.089 0.911 14 C -0.108 4.108 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.122 3.878 19 H 0.055 0.945 20 N -0.845 5.845 21 H 0.275 0.725 22 H 0.392 0.608 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.345 0.655 32 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -13.463 0.716 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.216 4.216 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.093 0.907 9 N -0.221 5.221 10 C 0.237 3.763 11 O -0.490 6.490 12 C -0.105 4.105 13 H 0.107 0.893 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.181 4.181 18 C 0.010 3.990 19 H 0.073 0.927 20 N -0.375 5.375 21 H 0.085 0.915 22 H 0.226 0.774 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.450 -12.601 1.006 12.877 hybrid contribution -0.405 0.260 -0.293 0.563 sum -2.855 -12.341 0.714 12.687 Atomic orbital electron populations 1.69690 1.06761 1.28926 1.51312 1.26001 0.96553 1.02265 0.96773 0.84899 0.77960 0.77331 0.78302 1.19988 1.19617 1.19585 1.19689 0.92533 0.84354 1.49266 0.90715 1.41993 1.09012 1.04748 1.66345 1.20852 0.88227 0.85911 0.81301 1.90507 1.15608 1.87821 1.55096 1.21231 0.96941 0.91835 1.00507 0.89303 1.21509 0.97809 0.99559 0.95754 1.21527 0.97634 0.92506 1.03136 1.21498 0.97478 0.98769 0.97482 1.22377 0.99402 0.96800 0.99561 1.21048 0.92075 0.92239 0.93623 0.92706 1.58594 1.21320 1.53494 1.04049 0.91521 0.77435 0.92988 0.92218 0.90919 0.90291 0.89708 0.92317 0.91087 0.90652 0.84173 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.78 13.05 21.67 0.28 -51.50 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 3 Si 0.99 44.69 29.55 68.60 2.03 46.72 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.33 -19.56 9.68 84.04 0.81 -18.74 16 8 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -31.50 5.18 -306.98 -1.59 -33.09 16 10 C 0.45 22.51 6.94 87.66 0.61 23.12 16 11 O -0.61 -35.11 14.78 -3.07 -0.05 -35.15 16 12 C -0.08 -2.99 2.18 -11.54 -0.03 -3.02 16 13 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 14 C -0.11 -3.35 5.10 30.60 0.16 -3.20 16 15 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 16 C -0.11 -2.23 5.92 30.59 0.18 -2.04 16 17 C -0.14 -3.04 5.49 30.61 0.17 -2.87 16 18 C 0.12 3.85 2.25 44.93 0.10 3.95 16 19 H 0.05 2.01 8.10 -2.38 -0.02 1.99 16 20 N -0.85 -27.31 8.05 -168.62 -1.36 -28.66 16 21 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 22 H 0.39 20.32 7.32 -92.71 -0.68 19.64 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.98 7.56 -2.39 -0.02 1.96 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.34 9.18 9.04 -89.69 -0.81 8.37 16 32 H 0.34 9.81 8.98 -89.69 -0.81 9.00 16 Total: -1.00 -69.70 262.52 0.81 -68.88 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -1.16 Total: 38.33 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 2.65 Total: -5.53 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.66 Total: -113.25 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.05 Total: -35.15 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.70 0.81 -68.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds