Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47396 * 270.00053 * 3 2 1 5 5 H 1.48505 * 109.47190 * 30.00122 * 3 2 1 6 6 H 1.48503 * 109.46933 * 149.99951 * 3 2 1 7 7 C 1.38946 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00462 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99560 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99736 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99991 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.46805 * 299.99859 * 12 10 9 14 14 C 1.52996 * 109.47130 * 60.00074 * 12 10 9 15 15 C 1.53001 * 109.47486 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46637 * 299.99742 * 15 14 12 17 17 C 1.53006 * 109.46977 * 59.99946 * 16 15 14 18 18 C 1.52997 * 109.47127 * 299.99541 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47254 * 300.00134 * 18 17 16 21 21 H 0.96998 * 120.00233 * 0.02562 * 1 2 3 22 22 H 0.96992 * 120.00340 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46993 * 300.00313 * 14 12 10 24 24 H 1.09004 * 109.47298 * 59.99898 * 14 12 10 25 25 H 1.08996 * 109.46778 * 59.99584 * 15 14 12 26 26 H 1.08992 * 109.47514 * 179.97438 * 15 14 12 27 27 H 1.09000 * 109.46986 * 179.97438 * 16 15 14 28 28 H 1.08993 * 109.47662 * 299.99908 * 16 15 14 29 29 H 1.08998 * 109.46505 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.46884 * 60.00293 * 17 16 15 31 31 H 1.00893 * 111.00057 * 300.00421 * 20 18 17 32 32 H 1.00900 * 110.99967 * 63.95300 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3705 0.0000 13 1 5.9240 -1.8567 -0.8900 14 6 6.0707 -1.6493 1.2492 15 6 7.6007 -1.6487 1.2490 16 6 8.1112 -3.0911 1.2487 17 6 7.6011 -3.8123 -0.0006 18 6 6.0712 -3.8129 -0.0003 19 1 5.7078 -4.3271 -0.8900 20 7 5.5820 -4.5057 1.1992 21 1 -0.4850 0.8400 -0.0004 22 1 3.8648 -0.3633 0.0004 23 1 5.7073 -0.6216 1.2492 24 1 5.7074 -2.1631 2.1392 25 1 7.9637 -1.1347 0.3590 26 1 7.9641 -1.1345 2.1387 27 1 9.2012 -3.0907 1.2481 28 1 7.7482 -3.6052 2.1386 29 1 7.9652 -4.8397 -0.0009 30 1 7.9642 -3.2983 -0.8905 31 1 5.9059 -5.4609 1.2223 32 1 5.8514 -4.0122 2.0370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -75.027346 kcal Electronic energy + Delta-G solvation = -14717.851791 eV Core-core repulsion = 12290.452341 eV Total energy + Delta-G solvation = -2427.399450 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.05343 -38.80031 -35.92035 -33.92251 -33.41295 -31.93227 -29.47912 -26.90708 -24.05094 -23.20619 -21.17702 -20.51178 -19.57072 -17.67020 -17.37212 -16.68580 -15.92646 -15.46667 -15.23448 -15.05147 -14.83603 -14.52033 -14.27233 -13.45916 -13.35704 -13.00908 -12.88721 -12.75637 -12.40124 -12.13762 -11.98332 -11.56905 -11.44429 -11.32078 -10.96656 -10.16341 -10.14410 -9.22278 -8.37714 -5.96519 1.28654 1.34962 1.43133 2.10051 2.24320 3.00051 3.19322 3.71136 3.81414 3.89159 4.00428 4.25971 4.31598 4.45609 4.49051 4.55348 4.73302 4.79468 4.97575 5.14871 5.18949 5.22575 5.31225 5.41090 5.52765 5.60905 6.00922 6.50260 6.64997 6.79689 6.96569 7.48992 8.10542 8.80815 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045014 B = 0.009281 C = 0.008084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.879625 B = 3016.085782 C = 3462.814855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.019 4.019 3 Si 0.962 3.038 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.323 4.323 8 H 0.053 0.947 9 N -0.601 5.601 10 C 0.459 3.541 11 O -0.595 6.595 12 C -0.089 4.089 13 H 0.106 0.894 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.144 4.144 18 C 0.118 3.882 19 H 0.056 0.944 20 N -0.844 5.844 21 H 0.277 0.723 22 H 0.385 0.615 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.342 0.658 32 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.005 0.405 2.030 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.217 4.217 3 Si 0.782 3.218 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.452 4.452 8 H 0.071 0.929 9 N -0.243 5.243 10 C 0.247 3.753 11 O -0.478 6.478 12 C -0.111 4.111 13 H 0.124 0.876 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.184 4.184 18 C 0.005 3.995 19 H 0.074 0.926 20 N -0.376 5.376 21 H 0.087 0.913 22 H 0.220 0.780 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.662 -0.083 1.744 19.740 hybrid contribution 0.342 0.658 0.145 0.756 sum 20.005 0.575 1.888 20.102 Atomic orbital electron populations 1.69814 1.08061 1.28984 1.51296 1.26078 0.96462 1.02567 0.96549 0.85402 0.79441 0.77008 0.79907 1.18163 1.19940 1.15726 1.19021 0.81805 0.94733 1.49647 0.92929 1.42112 1.05534 1.07605 1.69085 1.20947 0.90866 0.83102 0.80356 1.90561 1.71218 1.32490 1.53489 1.21338 0.89668 0.98635 1.01413 0.87633 1.21567 0.97708 0.99784 0.96051 1.21542 0.92524 0.97376 1.03422 1.21553 1.01256 0.95378 0.97414 1.22308 0.94712 1.01570 0.99812 1.21020 0.92696 0.91992 0.93753 0.92561 1.58646 1.68650 1.06073 1.04223 0.91346 0.78020 0.91738 0.92405 0.90494 0.90196 0.89825 0.92361 0.90878 0.90426 0.84441 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.57 13.96 21.66 0.30 -58.27 16 2 C -0.02 -1.09 5.50 84.93 0.47 -0.63 16 3 Si 0.96 40.47 27.74 68.60 1.90 42.37 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.23 -8.38 6.52 99.48 0.65 -7.73 16 7 C -0.32 -19.72 10.16 84.04 0.85 -18.86 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.60 -29.86 4.98 -306.98 -1.53 -31.39 16 10 C 0.46 21.80 6.94 87.66 0.61 22.41 16 11 O -0.60 -34.33 14.78 -3.08 -0.05 -34.38 16 12 C -0.09 -2.86 2.35 -11.54 -0.03 -2.88 16 13 H 0.11 2.92 8.14 -2.39 -0.02 2.91 16 14 C -0.11 -2.97 4.84 30.59 0.15 -2.82 16 15 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 16 C -0.12 -1.92 5.66 30.60 0.17 -1.74 16 17 C -0.14 -2.76 5.61 30.60 0.17 -2.59 16 18 C 0.12 3.43 2.69 44.92 0.12 3.56 16 19 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 20 N -0.84 -26.16 7.91 -168.68 -1.33 -27.49 16 21 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 22 H 0.38 16.16 5.18 -92.71 -0.48 15.68 16 23 H 0.06 1.71 7.56 -2.39 -0.02 1.69 16 24 H 0.06 1.67 6.57 -2.38 -0.02 1.66 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.98 6.76 -2.39 -0.02 0.96 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.34 8.90 9.04 -89.70 -0.81 8.09 16 32 H 0.34 9.47 5.44 -89.69 -0.49 8.98 16 Total: -1.00 -77.14 252.98 1.30 -75.84 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.69 Total: 38.65 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 2.70 Total: -5.34 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -2.56 Total: -117.14 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.05 Total: -34.38 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.90 Total: 42.37 kcal Total: -77.14 1.30 -75.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds