Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.41816 * 2 1 4 4 O 1.44423 * 110.37296 * 122.31509 * 2 1 3 5 5 C 1.44785 * 105.29468 * 159.37552 * 4 2 1 6 6 H 1.09001 * 110.42598 * 78.22528 * 5 4 2 7 7 C 1.53005 * 110.48456 * 200.66868 * 5 4 2 8 8 C 1.54477 * 104.62915 * 319.46026 * 5 4 2 9 9 H 1.09002 * 110.51371 * 265.29792 * 8 5 4 10 10 C 1.53004 * 110.50913 * 142.72625 * 8 5 4 11 11 C 1.54478 * 110.36920 * 237.69219 * 2 1 3 12 12 H 1.09000 * 110.51268 * 98.54461 * 11 2 1 13 13 C 1.50705 * 110.63103 * 335.89352 * 11 2 1 14 14 O 1.21431 * 119.99854 * 275.29000 * 13 11 2 15 15 C 1.41019 * 120.00091 * 95.29103 * 13 11 2 16 16 H 1.08003 * 120.00076 * 359.97438 * 15 13 11 17 17 C 1.40465 * 120.00306 * 180.02562 * 15 13 11 18 18 N 1.30520 * 119.99397 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00317 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47152 * 59.99306 * 19 17 15 21 21 H 1.48502 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47149 * 299.99647 * 19 17 15 23 23 H 1.08996 * 109.46857 * 182.30611 * 1 2 3 24 24 H 1.08996 * 109.46714 * 302.30608 * 1 2 3 25 25 H 1.09001 * 109.47087 * 62.30632 * 1 2 3 26 26 H 1.09000 * 109.46805 * 175.23044 * 7 5 4 27 27 H 1.08988 * 109.47753 * 295.23726 * 7 5 4 28 28 H 1.09003 * 109.46791 * 55.23837 * 7 5 4 29 29 H 1.08997 * 109.46980 * 303.30400 * 10 8 5 30 30 H 1.09000 * 109.47208 * 63.30799 * 10 8 5 31 31 H 1.09004 * 109.46857 * 183.31081 * 10 8 5 32 32 H 0.97003 * 119.99534 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0329 -0.7238 1.1442 5 6 3.3911 -1.0876 0.7992 6 1 4.0564 -0.2328 0.9205 7 6 3.8663 -2.2601 1.6598 8 6 3.3178 -1.5057 -0.6861 9 1 3.1955 -2.5853 -0.7734 10 6 4.5710 -1.0472 -1.4345 11 6 2.0678 -0.7740 -1.2240 12 1 2.3429 -0.0839 -2.0216 13 6 1.0457 -1.7664 -1.7156 14 8 0.9741 -2.8667 -1.2067 15 6 0.1725 -1.4174 -2.7665 16 1 0.2359 -0.4387 -3.2188 17 6 -0.7805 -2.3422 -3.2243 18 7 -0.8574 -3.5247 -2.6774 19 14 -1.9376 -1.8796 -4.6158 20 1 -1.1464 -1.5494 -5.8285 21 1 -2.8399 -3.0218 -4.9098 22 1 -2.7460 -0.6997 -4.2159 23 1 -0.3633 -1.0268 0.0414 24 1 -0.3632 0.5492 0.8686 25 1 -0.3633 0.4776 -0.9100 26 1 4.8564 -2.5749 1.3300 27 1 3.9127 -1.9495 2.7035 28 1 3.1684 -3.0912 1.5588 29 1 4.6845 0.0314 -1.3265 30 1 5.4457 -1.5480 -1.0195 31 1 4.4756 -1.2985 -2.4909 32 1 -1.5153 -4.1635 -2.9938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083523859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = -105.407121 kcal Electronic energy + Delta-G solvation = -14995.945365 eV Core-core repulsion = 12534.935798 eV Total energy + Delta-G solvation = -2461.009567 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43139 -36.18704 -33.11216 -32.56616 -31.76772 -28.79448 -27.21169 -25.93094 -22.65496 -21.47857 -20.11025 -18.49220 -16.35256 -15.50722 -15.27768 -15.01511 -14.29211 -13.65996 -12.97145 -12.88069 -12.82049 -12.23535 -11.94379 -11.79911 -11.52024 -11.30322 -11.18617 -11.00984 -10.80474 -10.69109 -10.36760 -10.21174 -9.90767 -9.78706 -9.75373 -9.03465 -8.82584 -7.30072 -6.18403 -4.84634 3.07608 3.14445 3.16097 4.04769 4.22929 4.51021 5.23422 5.28070 5.43638 5.65940 5.71541 5.82461 5.86315 5.94534 6.02122 6.10801 6.12724 6.30650 6.36280 6.48823 6.61362 6.65329 6.76118 6.82286 6.84802 7.08539 7.20206 7.29526 7.65369 8.11338 8.87121 8.95080 10.39915 10.64396 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042772 B = 0.009967 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.479287 B = 2808.703267 C = 2910.400903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.052 0.948 4 O -0.371 6.371 5 C 0.078 3.922 6 H 0.056 0.944 7 C -0.143 4.143 8 C -0.113 4.113 9 H 0.095 0.905 10 C -0.138 4.138 11 C -0.157 4.157 12 H 0.075 0.925 13 C 0.383 3.617 14 O -0.536 6.536 15 C -0.534 4.534 16 H 0.066 0.934 17 C 0.084 3.916 18 N -0.741 5.741 19 Si 0.900 3.100 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 5.572 1.915 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.036 3.964 3 H 0.070 0.930 4 O -0.290 6.290 5 C 0.020 3.980 6 H 0.073 0.927 7 C -0.200 4.200 8 C -0.132 4.132 9 H 0.114 0.886 10 C -0.196 4.196 11 C -0.177 4.177 12 H 0.094 0.906 13 C 0.276 3.724 14 O -0.424 6.424 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.369 5.369 19 Si 0.725 3.275 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.190 1.190 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.352 4.813 2.408 7.590 hybrid contribution -0.413 0.546 -1.026 1.234 sum 4.939 5.359 1.382 7.418 Atomic orbital electron populations 1.21811 0.93032 1.04027 1.00914 1.22683 0.95642 0.93343 0.84777 0.92996 1.89140 1.26718 1.74760 1.38424 1.22961 0.84699 0.96014 0.94323 0.92656 1.21754 1.00933 0.98301 0.98990 1.22513 0.94172 1.02932 0.93560 0.88638 1.21793 0.96942 1.00236 1.00590 1.23259 0.97269 0.99802 0.97360 0.90644 1.19112 0.82901 0.86406 0.83969 1.90396 1.70592 1.23282 1.58129 1.20745 1.16874 1.00683 1.18268 0.91580 1.25979 0.97101 0.94253 0.96552 1.69944 1.28031 1.04430 1.34538 0.86540 0.80241 0.78997 0.81749 1.19098 1.20415 1.19001 0.90492 0.93925 0.90665 0.91872 0.92806 0.91268 0.93276 0.93216 0.92391 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.48 37.16 0.32 -2.67 16 2 C 0.09 1.94 3.84 -25.95 -0.10 1.84 16 3 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 4 O -0.37 -8.08 11.05 -35.23 -0.39 -8.47 16 5 C 0.08 1.44 3.49 -25.95 -0.09 1.35 16 6 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 7 C -0.14 -2.34 9.52 37.16 0.35 -1.98 16 8 C -0.11 -2.27 2.76 -89.05 -0.25 -2.52 16 9 H 0.10 2.22 6.66 -51.93 -0.35 1.87 16 10 C -0.14 -2.21 8.95 37.16 0.33 -1.88 16 11 C -0.16 -3.50 2.96 -90.20 -0.27 -3.77 16 12 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 13 C 0.38 10.48 4.03 -33.25 -0.13 10.34 16 14 O -0.54 -16.77 14.24 5.43 0.08 -16.69 16 15 C -0.53 -14.49 8.29 -37.69 -0.31 -14.81 16 16 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 17 C 0.08 2.26 5.50 -17.27 -0.10 2.16 16 18 N -0.74 -21.36 11.72 55.57 0.65 -20.71 16 19 Si 0.90 19.42 29.56 -169.99 -5.03 14.40 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H 0.08 1.93 6.97 -51.93 -0.36 1.57 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.53 7.59 -51.93 -0.39 1.14 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 263.76 15.07 3.97 3.97 Total: -1.00 -31.59 263.76 -5.79 -37.38 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.84 Total: 2.03 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.24 Total: -11.92 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.65 Total: -20.71 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.31 Total: -25.16 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.59 -5.79 -37.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083523859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.025 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds