Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47019 * 269.99809 * 3 2 1 5 5 H 1.48495 * 109.47319 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47314 * 150.00064 * 3 2 1 7 7 C 1.38951 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99618 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99800 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99599 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99893 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.01615 * 332.17289 * 12 10 9 14 14 C 1.54272 * 110.03067 * 210.73337 * 12 10 9 15 15 C 1.54891 * 104.19142 * 217.10530 * 14 12 10 16 16 C 1.55010 * 102.75689 * 37.95511 * 15 14 12 17 17 C 1.53875 * 110.03310 * 93.56618 * 12 10 9 18 18 H 1.09003 * 110.03149 * 238.57196 * 17 12 10 19 19 C 1.52998 * 110.02790 * 359.95101 * 17 12 10 20 20 N 1.46908 * 109.46981 * 185.06929 * 19 17 12 21 21 H 0.97009 * 120.00050 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00473 * 0.02562 * 9 7 2 23 23 H 1.09000 * 110.48531 * 335.78271 * 14 12 10 24 24 H 1.08997 * 110.48646 * 98.29524 * 14 12 10 25 25 H 1.09006 * 110.75654 * 156.25733 * 15 14 12 26 26 H 1.09001 * 110.75639 * 279.44237 * 15 14 12 27 27 H 1.09006 * 110.52752 * 203.38505 * 16 15 14 28 28 H 1.08997 * 110.50948 * 80.70288 * 16 15 14 29 29 H 1.09001 * 109.47372 * 305.06688 * 19 17 12 30 30 H 1.09000 * 109.47405 * 65.07326 * 19 17 12 31 31 H 1.00896 * 111.00204 * 179.97438 * 20 19 17 32 32 H 1.00899 * 110.99606 * 303.95970 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2032 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 1 5.9337 -1.4652 -0.4778 14 6 6.0891 -3.6169 -0.7385 15 6 7.3444 -4.0332 0.0678 16 6 6.9178 -3.7564 1.5321 17 6 6.0878 -2.4591 1.4440 18 1 6.7174 -1.5972 1.6651 19 6 4.9168 -2.5182 2.4269 20 7 5.4301 -2.4801 3.8029 21 1 -0.4851 0.8401 0.0004 22 1 3.8648 -0.3633 -0.0004 23 1 5.3449 -4.4132 -0.7240 24 1 6.3582 -3.3662 -1.7646 25 1 7.5633 -5.0912 -0.0771 26 1 8.2025 -3.4212 -0.2100 27 1 7.7937 -3.6067 2.1636 28 1 6.3071 -4.5749 1.9133 29 1 4.2594 -1.6649 2.2607 30 1 4.3592 -3.4420 2.2726 31 1 4.6754 -2.5176 4.4715 32 1 6.0924 -3.2244 3.9624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084310231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -53.033039 kcal Electronic energy + Delta-G solvation = -14705.548293 eV Core-core repulsion = 12279.102588 eV Total energy + Delta-G solvation = -2426.445705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60319 -36.80441 -34.05119 -33.65750 -31.66776 -29.17261 -28.33804 -24.85692 -23.30958 -20.80676 -20.25022 -18.95078 -17.65456 -16.28121 -15.75323 -15.22101 -14.93052 -14.34445 -14.12333 -13.26059 -13.19480 -12.76019 -12.48330 -12.27559 -12.25482 -11.24699 -11.14019 -10.84847 -10.71840 -10.58626 -10.45481 -10.33251 -10.26470 -9.96269 -9.54917 -8.52810 -8.36379 -8.13937 -6.30940 -3.82029 3.05639 3.09212 3.16872 3.73502 4.11554 4.58396 4.72329 4.81229 4.95738 5.22240 5.29518 5.59558 5.68040 5.73560 5.78646 5.84131 5.94853 6.00782 6.09551 6.21465 6.25261 6.35636 6.51395 6.63524 6.71231 7.36639 7.58366 7.66087 8.15494 8.60360 8.95379 9.44102 9.84646 10.82124 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.009746 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.665447 B = 2872.419643 C = 3072.989684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.461 3.539 11 O -0.578 6.578 12 C -0.105 4.105 13 H 0.077 0.923 14 C -0.110 4.110 15 C -0.122 4.122 16 C -0.117 4.117 17 C -0.074 4.074 18 H 0.079 0.921 19 C 0.056 3.944 20 N -0.852 5.852 21 H 0.273 0.727 22 H 0.371 0.629 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.339 0.661 32 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.934 -2.490 2.644 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.136 0.864 9 N -0.228 5.228 10 C 0.248 3.752 11 O -0.461 6.461 12 C -0.128 4.128 13 H 0.096 0.904 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.094 4.094 18 H 0.097 0.903 19 C -0.075 4.075 20 N -0.380 5.380 21 H 0.084 0.916 22 H 0.204 0.796 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.568 -2.335 2.436 13.982 hybrid contribution 0.032 0.588 0.073 0.593 sum 13.600 -1.747 2.509 13.939 Atomic orbital electron populations 1.69623 1.05659 1.27489 1.49374 1.25035 0.95473 0.97972 0.97586 0.86709 0.79982 0.84091 0.78949 1.19616 1.20160 1.19275 1.19434 0.79405 0.96528 1.48084 0.86371 1.42348 1.07493 1.06299 1.66626 1.19638 0.88297 0.84323 0.82968 1.90528 1.69621 1.31084 1.54870 1.21878 0.94580 0.99861 0.96480 0.90442 1.22309 0.97205 0.97575 0.97710 1.22483 0.97625 1.00636 0.95220 1.22438 0.98977 0.97259 0.96825 1.21667 0.96301 0.98455 0.92952 0.90285 1.22131 0.95878 1.02242 0.87223 1.58811 1.20650 1.53940 1.04629 0.91640 0.79616 0.89553 0.91965 0.91810 0.91821 0.91825 0.91758 0.90008 0.93905 0.84897 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.71 27.74 -169.99 -4.71 15.00 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 7 C -0.31 -8.66 10.16 -14.94 -0.15 -8.81 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -14.19 4.53 -10.97 -0.05 -14.24 16 10 C 0.46 10.47 4.64 -10.98 -0.05 10.42 16 11 O -0.58 -15.29 14.60 5.55 0.08 -15.21 16 12 C -0.11 -1.82 3.29 -90.65 -0.30 -2.12 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.11 -1.71 6.31 -25.07 -0.16 -1.87 16 15 C -0.12 -1.52 6.91 -24.67 -0.17 -1.69 16 16 C -0.12 -1.53 5.57 -25.01 -0.14 -1.67 16 17 C -0.07 -1.15 3.15 -89.50 -0.28 -1.43 16 18 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.06 0.98 4.96 -3.82 -0.02 0.96 16 20 N -0.85 -12.25 9.62 -10.36 -0.10 -12.35 16 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.37 8.05 5.76 -40.82 -0.24 7.81 16 23 H 0.09 1.56 6.88 -51.93 -0.36 1.20 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.88 7.76 -51.93 -0.40 0.48 16 29 H 0.08 1.67 6.81 -51.93 -0.35 1.32 16 30 H 0.04 0.85 7.11 -51.93 -0.37 0.48 16 31 H 0.34 4.56 9.08 -39.29 -0.36 4.20 16 32 H 0.33 4.08 8.23 -39.29 -0.32 3.76 16 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -31.19 257.86 -5.98 -37.17 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -4.49 Total: 16.00 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.37 Total: -5.14 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.63 Total: -51.69 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.19 -5.98 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds