Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47019 * 269.99809 * 3 2 1 5 5 H 1.48495 * 109.47319 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47314 * 150.00064 * 3 2 1 7 7 C 1.38951 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99618 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99800 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99599 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99893 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.01615 * 332.17289 * 12 10 9 14 14 C 1.54272 * 110.03067 * 210.73337 * 12 10 9 15 15 C 1.54891 * 104.19142 * 217.10530 * 14 12 10 16 16 C 1.55010 * 102.75689 * 37.95511 * 15 14 12 17 17 C 1.53875 * 110.03310 * 93.56618 * 12 10 9 18 18 H 1.09003 * 110.03149 * 238.57196 * 17 12 10 19 19 C 1.52998 * 110.02790 * 359.95101 * 17 12 10 20 20 N 1.46908 * 109.46981 * 185.06929 * 19 17 12 21 21 H 0.97009 * 120.00050 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00473 * 0.02562 * 9 7 2 23 23 H 1.09000 * 110.48531 * 335.78271 * 14 12 10 24 24 H 1.08997 * 110.48646 * 98.29524 * 14 12 10 25 25 H 1.09006 * 110.75654 * 156.25733 * 15 14 12 26 26 H 1.09001 * 110.75639 * 279.44237 * 15 14 12 27 27 H 1.09006 * 110.52752 * 203.38505 * 16 15 14 28 28 H 1.08997 * 110.50948 * 80.70288 * 16 15 14 29 29 H 1.09001 * 109.47372 * 305.06688 * 19 17 12 30 30 H 1.09000 * 109.47405 * 65.07326 * 19 17 12 31 31 H 1.00896 * 111.00204 * 179.97438 * 20 19 17 32 32 H 1.00899 * 110.99606 * 303.95970 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2032 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 1 5.9337 -1.4652 -0.4778 14 6 6.0891 -3.6169 -0.7385 15 6 7.3444 -4.0332 0.0678 16 6 6.9178 -3.7564 1.5321 17 6 6.0878 -2.4591 1.4440 18 1 6.7174 -1.5972 1.6651 19 6 4.9168 -2.5182 2.4269 20 7 5.4301 -2.4801 3.8029 21 1 -0.4851 0.8401 0.0004 22 1 3.8648 -0.3633 -0.0004 23 1 5.3449 -4.4132 -0.7240 24 1 6.3582 -3.3662 -1.7646 25 1 7.5633 -5.0912 -0.0771 26 1 8.2025 -3.4212 -0.2100 27 1 7.7937 -3.6067 2.1636 28 1 6.3071 -4.5749 1.9133 29 1 4.2594 -1.6649 2.2607 30 1 4.3592 -3.4420 2.2726 31 1 4.6754 -2.5176 4.4715 32 1 6.0924 -3.2244 3.9624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084310231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -77.842626 kcal Electronic energy + Delta-G solvation = -14706.624118 eV Core-core repulsion = 12279.102588 eV Total energy + Delta-G solvation = -2427.521530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19907 -38.37708 -36.02689 -34.97881 -33.77019 -30.52214 -29.53952 -26.82624 -24.64538 -22.39459 -21.45900 -20.89900 -19.39423 -17.83709 -17.11274 -16.91449 -16.49127 -15.83047 -15.46435 -15.01986 -14.76627 -14.42394 -14.31248 -13.84295 -13.55241 -13.03247 -12.51200 -12.45348 -12.02012 -11.99519 -11.89164 -11.61396 -11.59532 -11.52341 -11.38474 -10.36527 -10.26421 -9.67970 -8.44021 -6.04068 1.28135 1.31790 1.40893 1.93164 2.19889 2.90778 3.11812 3.48225 3.62329 3.75290 4.03690 4.30485 4.39055 4.45458 4.56874 4.59397 4.70921 4.79376 4.92523 5.01125 5.10068 5.24221 5.29209 5.37704 5.53961 5.56006 5.93092 6.11629 6.56033 6.57042 6.85702 7.38075 7.94226 8.73623 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.009746 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.665447 B = 2872.419643 C = 3072.989684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.326 4.326 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.464 3.536 11 O -0.623 6.623 12 C -0.103 4.103 13 H 0.108 0.892 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.071 4.071 18 H 0.103 0.897 19 C 0.063 3.937 20 N -0.841 5.841 21 H 0.279 0.721 22 H 0.387 0.613 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.344 0.656 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.906 -0.811 2.890 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.211 4.211 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.455 4.455 8 H 0.073 0.927 9 N -0.231 5.231 10 C 0.253 3.747 11 O -0.509 6.509 12 C -0.125 4.125 13 H 0.126 0.874 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.090 4.090 18 H 0.121 0.879 19 C -0.068 4.068 20 N -0.371 5.371 21 H 0.088 0.912 22 H 0.222 0.778 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.156 0.844 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.573 -0.677 2.690 17.791 hybrid contribution -1.283 -0.085 0.021 1.286 sum 16.290 -0.761 2.711 16.532 Atomic orbital electron populations 1.69798 1.08019 1.29182 1.50386 1.26056 0.96428 1.02508 0.96145 0.85445 0.79474 0.77157 0.80036 1.17960 1.19817 1.15926 1.18993 0.81533 0.94803 1.50192 0.92686 1.42192 1.05823 1.07586 1.67513 1.20804 0.90870 0.83055 0.80010 1.90509 1.71504 1.32850 1.56049 1.22036 0.89516 1.02248 0.98736 0.87407 1.22344 0.97957 0.95604 0.99291 1.22473 0.96581 1.02101 0.93559 1.22443 0.99357 0.95203 0.98110 1.21734 0.95703 1.00959 0.90622 0.87911 1.21909 0.96280 0.98843 0.89813 1.58773 1.20842 1.54515 1.02962 0.91151 0.77771 0.93190 0.90223 0.90461 0.88906 0.88667 0.93253 0.93275 0.97671 0.84417 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.96 21.66 0.30 -56.69 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.96 40.01 27.74 68.60 1.90 41.92 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.24 -8.55 6.52 99.48 0.65 -7.91 16 7 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.59 -28.83 4.53 -306.99 -1.39 -30.22 16 10 C 0.46 21.51 4.64 87.66 0.41 21.91 16 11 O -0.62 -35.03 14.60 -3.07 -0.04 -35.08 16 12 C -0.10 -3.35 3.29 -10.81 -0.04 -3.39 16 13 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 14 C -0.11 -3.31 6.31 31.67 0.20 -3.11 16 15 C -0.11 -2.27 6.91 31.93 0.22 -2.05 16 16 C -0.11 -2.56 5.57 31.71 0.18 -2.38 16 17 C -0.07 -2.00 3.15 -10.07 -0.03 -2.03 16 18 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 19 C 0.06 2.18 4.96 86.30 0.43 2.61 16 20 N -0.84 -22.74 9.62 -186.70 -1.80 -24.54 16 21 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 22 H 0.39 16.13 5.76 -92.71 -0.53 15.59 16 23 H 0.05 1.82 6.88 -2.39 -0.02 1.81 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.05 1.26 7.76 -2.39 -0.02 1.24 16 29 H 0.05 2.02 6.81 -2.39 -0.02 2.01 16 30 H 0.01 0.21 7.11 -2.39 -0.02 0.19 16 31 H 0.34 8.92 9.08 -89.70 -0.81 8.10 16 32 H 0.35 7.66 8.23 -89.69 -0.74 6.92 16 Total: -1.00 -74.00 257.86 0.66 -73.34 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -1.00 Total: 38.53 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 2.69 Total: -7.27 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -2.89 Total: -111.45 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.04 Total: -35.08 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.90 Total: 41.92 kcal Total: -74.00 0.66 -73.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.499 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds