Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48505 * 109.47013 * 239.99796 * 3 2 1 5 5 H 1.48493 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47079 * 120.00126 * 3 2 1 7 7 C 1.38946 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.34766 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00302 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00192 * 180.02562 * 10 9 7 13 13 H 1.08997 * 110.53725 * 61.15721 * 12 10 9 14 14 C 1.54270 * 110.48466 * 298.54782 * 12 10 9 15 15 C 1.53869 * 106.63967 * 217.73352 * 14 12 10 16 16 C 1.54268 * 106.60115 * 359.97438 * 15 14 12 17 17 C 1.54895 * 104.19476 * 23.60777 * 16 15 14 18 18 H 1.09001 * 110.75082 * 80.37254 * 17 16 15 19 19 C 1.52994 * 110.75628 * 203.55917 * 17 16 15 20 20 N 1.46898 * 109.47302 * 293.54530 * 19 17 16 21 21 H 0.96997 * 119.99846 * 0.02562 * 1 2 3 22 22 H 0.97003 * 119.99525 * 359.97438 * 9 7 2 23 23 H 1.09002 * 110.03399 * 98.42351 * 14 12 10 24 24 H 1.08995 * 110.02943 * 337.04251 * 14 12 10 25 25 H 1.08999 * 110.03405 * 119.26051 * 15 14 12 26 26 H 1.08996 * 110.03529 * 240.68999 * 15 14 12 27 27 H 1.08997 * 110.48788 * 142.28685 * 16 15 14 28 28 H 1.09000 * 110.48806 * 264.79985 * 16 15 14 29 29 H 1.08997 * 109.47343 * 53.54976 * 19 17 16 30 30 H 1.08998 * 109.47156 * 173.54708 * 19 17 16 31 31 H 1.00901 * 111.00034 * 180.02562 * 20 19 17 32 32 H 1.00896 * 111.00134 * 303.95541 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0031 12 6 1.2439 -4.8629 0.0032 13 1 0.6266 -4.9485 -0.8910 14 6 0.3754 -4.9844 1.2724 15 6 0.4365 -6.4586 1.7087 16 6 1.3397 -7.1830 0.6892 17 6 2.2262 -6.0575 0.1002 18 1 3.0517 -5.8243 0.7727 19 6 2.7501 -6.4479 -1.2832 20 7 3.6748 -7.5821 -1.1545 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3907 0.0024 23 1 -0.6538 -4.7035 1.0489 24 1 0.7739 -4.3450 2.0601 25 1 0.8655 -6.5349 2.7079 26 1 -0.5630 -6.8933 1.6970 27 1 1.9550 -7.9313 1.1887 28 1 0.7376 -7.6457 -0.0927 29 1 1.9136 -6.7318 -1.9217 30 1 3.2738 -5.6006 -1.7257 31 1 4.0352 -7.8588 -2.0554 32 1 4.4255 -7.3659 -0.5159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084310234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -86.760777 kcal Electronic energy + Delta-G solvation = -14379.511286 eV Core-core repulsion = 11951.603036 eV Total energy + Delta-G solvation = -2427.908250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80983 -38.38572 -35.97267 -35.03292 -33.26583 -30.28067 -29.61693 -26.85070 -24.59285 -22.41305 -20.95838 -20.49992 -19.86076 -17.83507 -16.94743 -16.73997 -16.01223 -15.69859 -15.40288 -15.23895 -14.87451 -14.74020 -14.05404 -13.58866 -13.02602 -12.98733 -12.56301 -12.46937 -12.18033 -11.97303 -11.81810 -11.70666 -11.56069 -11.52346 -11.24269 -10.26744 -10.03774 -9.58824 -8.48896 -5.98297 1.37114 1.38732 1.50059 2.03905 2.27803 3.17212 3.20515 3.48057 3.74236 3.96199 4.00943 4.29151 4.50875 4.56291 4.60671 4.68957 4.72060 4.81384 4.93557 5.02695 5.19876 5.24902 5.35067 5.38193 5.47626 5.59969 5.98036 6.18678 6.56787 6.60802 7.09396 7.54722 8.09713 8.68389 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045055 B = 0.007802 C = 0.006970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.312033 B = 3587.817837 C = 4016.432753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.444 3.556 11 O -0.635 6.635 12 C -0.097 4.097 13 H 0.102 0.898 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.063 4.063 18 H 0.054 0.946 19 C 0.076 3.924 20 N -0.841 5.841 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.001 0.999 31 H 0.348 0.652 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 -11.467 0.033 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.206 5.206 10 C 0.233 3.767 11 O -0.523 6.523 12 C -0.119 4.119 13 H 0.120 0.880 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.132 4.132 17 C -0.083 4.083 18 H 0.072 0.928 19 C -0.055 4.055 20 N -0.370 5.370 21 H 0.088 0.912 22 H 0.230 0.770 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.020 0.980 31 H 0.160 0.840 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.190 -11.691 0.316 11.756 hybrid contribution 0.768 1.926 -0.437 2.119 sum -0.422 -9.765 -0.121 9.775 Atomic orbital electron populations 1.69668 1.06846 1.29433 1.50062 1.26051 0.96555 1.02419 0.96138 0.85001 0.77816 0.76646 0.78942 1.19702 1.19239 1.19716 1.19666 0.92695 0.84256 1.50301 0.90455 1.41970 1.09267 1.04732 1.64602 1.20897 0.88009 0.86205 0.81624 1.90452 1.16051 1.88206 1.57563 1.22078 0.97531 0.91304 1.00968 0.88044 1.22104 0.99465 0.98414 0.95080 1.22141 1.01138 0.93070 0.99146 1.22216 0.96736 0.96101 0.98162 1.21819 0.96652 0.93187 0.96617 0.92779 1.21640 0.96487 0.91064 0.96300 1.58788 1.23162 1.38487 1.16594 0.91199 0.77046 0.90112 0.93949 0.91758 0.89436 0.90769 0.90383 0.90144 0.98027 0.83955 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.34 -19.78 9.68 84.04 0.81 -18.96 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -30.24 5.23 -306.99 -1.60 -31.85 16 10 C 0.44 21.91 6.97 87.66 0.61 22.52 16 11 O -0.63 -35.97 15.16 -3.08 -0.05 -36.01 16 12 C -0.10 -3.50 2.71 -10.44 -0.03 -3.53 16 13 H 0.10 3.33 8.05 -2.39 -0.02 3.31 16 14 C -0.11 -3.52 6.29 31.32 0.20 -3.32 16 15 C -0.12 -2.84 6.80 31.32 0.21 -2.63 16 16 C -0.09 -2.34 6.10 31.67 0.19 -2.15 16 17 C -0.06 -2.04 2.08 -9.48 -0.02 -2.06 16 18 H 0.05 2.07 7.53 -2.39 -0.02 2.05 16 19 C 0.08 2.28 6.23 86.30 0.54 2.82 16 20 N -0.84 -20.55 9.44 -186.74 -1.76 -22.31 16 21 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 22 H 0.40 20.07 7.88 -92.71 -0.73 19.34 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 29 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 30 H 0.00 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.35 7.03 9.08 -89.69 -0.81 6.21 16 32 H 0.34 8.37 8.99 -89.70 -0.81 7.56 16 Total: -1.00 -66.07 267.58 0.67 -65.40 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -1.21 Total: 36.85 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 2.98 Total: -7.48 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.08 Total: -104.26 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.07 0.67 -65.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.363 kcal (2) G-P(sol) polarization free energy of solvation -66.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds