Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00164 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00181 * 3 2 1 6 6 H 1.48499 * 109.47352 * 150.00011 * 3 2 1 7 7 C 1.38955 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00161 * 179.72222 * 7 2 1 9 9 N 1.37104 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99857 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99956 * 179.97438 * 10 9 7 13 13 H 1.08998 * 110.01450 * 301.39228 * 12 10 9 14 14 C 1.54273 * 110.03053 * 62.83415 * 12 10 9 15 15 C 1.54891 * 104.19568 * 95.67583 * 14 12 10 16 16 C 1.54895 * 102.74984 * 37.93973 * 15 14 12 17 17 C 1.53872 * 110.03123 * 179.97438 * 12 10 9 18 18 H 1.08995 * 110.03667 * 0.02562 * 17 12 10 19 19 C 1.53003 * 110.02946 * 121.43159 * 17 12 10 20 20 N 1.46902 * 109.47387 * 184.99851 * 19 17 12 21 21 H 0.97000 * 119.99719 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00093 * 359.97438 * 9 7 2 23 23 H 1.08995 * 110.48438 * 214.35043 * 14 12 10 24 24 H 1.09001 * 110.48659 * 336.99617 * 14 12 10 25 25 H 1.08997 * 110.75229 * 279.63020 * 15 14 12 26 26 H 1.08995 * 110.91750 * 156.32841 * 15 14 12 27 27 H 1.08991 * 110.48823 * 203.38033 * 16 15 14 28 28 H 1.09001 * 110.48489 * 80.73330 * 16 15 14 29 29 H 1.08998 * 109.47381 * 304.99827 * 19 17 12 30 30 H 1.09004 * 109.47124 * 65.00445 * 19 17 12 31 31 H 1.00904 * 110.99592 * 56.04247 * 20 19 17 32 32 H 1.00896 * 111.00574 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 -0.0040 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0011 13 1 0.5956 -4.9191 0.8756 14 6 0.4060 -4.9900 -1.2881 15 6 1.3012 -5.8186 -2.2427 16 6 1.9607 -6.8449 -1.2882 17 6 2.2323 -6.0422 0.0004 18 1 3.2569 -5.6707 0.0000 19 6 1.9954 -6.9254 1.2271 20 7 3.0198 -7.9771 1.2786 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3907 0.0005 23 1 -0.5266 -5.5168 -1.0865 24 1 0.2056 -4.0058 -1.7113 25 1 2.0556 -5.1863 -2.7108 26 1 0.7003 -6.3245 -2.9983 27 1 2.8947 -7.2142 -1.7115 28 1 1.2790 -7.6712 -1.0866 29 1 2.0537 -6.3170 2.1296 30 1 1.0082 -7.3828 1.1603 31 1 3.9470 -7.5791 1.2758 32 1 2.8848 -8.5745 2.0804 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084310236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -84.975350 kcal Electronic energy + Delta-G solvation = -14408.052517 eV Core-core repulsion = 11980.221689 eV Total energy + Delta-G solvation = -2427.830828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92226 -38.37075 -35.97846 -34.97112 -33.28493 -30.27220 -29.57334 -26.87726 -24.64602 -22.41929 -21.22546 -20.27203 -19.77444 -17.73621 -17.01927 -16.78096 -16.09269 -15.72044 -15.53111 -15.25963 -14.79637 -14.57680 -14.19683 -13.56935 -13.03372 -12.97327 -12.48538 -12.21792 -12.05206 -11.97965 -11.88326 -11.78608 -11.62781 -11.50733 -11.32837 -10.26518 -10.03916 -9.56971 -8.49167 -5.98513 1.35665 1.39113 1.52139 2.03359 2.27822 3.14512 3.18204 3.53114 3.78236 3.98726 4.00987 4.31062 4.46609 4.48575 4.63721 4.69592 4.78659 4.87433 4.95185 5.02401 5.16824 5.20957 5.34728 5.39326 5.43403 5.65551 5.98136 6.21873 6.56786 6.63815 7.09432 7.54231 8.09333 8.68326 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048335 B = 0.007573 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.148794 B = 3696.697766 C = 3921.319058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.444 3.556 11 O -0.635 6.635 12 C -0.096 4.096 13 H 0.099 0.901 14 C -0.111 4.111 15 C -0.125 4.125 16 C -0.090 4.090 17 C -0.082 4.082 18 H 0.059 0.941 19 C 0.076 3.924 20 N -0.848 5.848 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.102 0.898 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.014 0.986 30 H 0.088 0.912 31 H 0.340 0.660 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -11.645 0.126 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.523 6.523 12 C -0.118 4.118 13 H 0.117 0.883 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.128 4.128 17 C -0.101 4.101 18 H 0.078 0.922 19 C -0.055 4.055 20 N -0.378 5.378 21 H 0.088 0.912 22 H 0.230 0.770 23 H 0.121 0.879 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.422 -11.715 -0.553 11.814 hybrid contribution 0.341 1.675 1.006 1.984 sum -1.081 -10.040 0.453 10.108 Atomic orbital electron populations 1.69674 1.06838 1.29368 1.50124 1.26054 0.96560 1.02414 0.96137 0.84932 0.77874 0.76830 0.78723 1.19551 1.19303 1.19843 1.19697 0.92666 0.84219 1.50233 0.90503 1.41928 1.09264 1.04680 1.64652 1.20898 0.88000 0.86457 0.81453 1.90434 1.16239 1.87939 1.57703 1.21807 0.97494 0.91437 1.01077 0.88310 1.22390 0.98766 1.00342 0.93348 1.22525 0.98376 0.97414 0.97971 1.22172 1.00492 0.96980 0.93138 1.21675 0.98910 0.92941 0.96560 0.92226 1.21817 0.96739 0.91990 0.94910 1.58700 1.06208 1.23096 1.49819 0.91203 0.76997 0.87940 0.93260 0.94356 0.89010 0.92218 0.89568 0.96823 0.89382 0.84774 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 13.05 21.66 0.28 -50.05 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.34 -19.75 9.68 84.04 0.81 -18.94 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -30.26 4.99 -306.98 -1.53 -31.79 16 10 C 0.44 21.98 7.02 87.66 0.62 22.60 16 11 O -0.63 -36.41 14.78 -3.07 -0.05 -36.45 16 12 C -0.10 -3.46 2.95 -10.81 -0.03 -3.50 16 13 H 0.10 3.20 7.67 -2.39 -0.02 3.18 16 14 C -0.11 -3.42 6.35 31.67 0.20 -3.22 16 15 C -0.13 -3.61 6.91 31.89 0.22 -3.39 16 16 C -0.09 -2.47 6.19 31.65 0.20 -2.28 16 17 C -0.08 -2.65 2.68 -10.09 -0.03 -2.67 16 18 H 0.06 2.42 6.39 -2.39 -0.02 2.40 16 19 C 0.08 1.98 5.84 86.30 0.50 2.49 16 20 N -0.85 -19.02 9.44 -186.71 -1.76 -20.78 16 21 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 22 H 0.40 20.08 7.79 -92.71 -0.72 19.36 16 23 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.05 1.75 7.50 -2.39 -0.02 1.73 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.98 7.76 -2.39 -0.02 1.97 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 1.96 8.00 -2.39 -0.02 1.94 16 31 H 0.34 7.91 8.99 -89.69 -0.81 7.11 16 32 H 0.35 6.09 9.08 -89.70 -0.81 5.27 16 Total: -1.00 -66.87 265.62 0.73 -66.14 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -1.20 Total: 36.45 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 2.96 Total: -9.08 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -3.01 Total: -102.62 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.05 Total: -36.45 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.87 0.73 -66.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.839 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds