Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48494 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00572 * 3 2 1 6 6 H 1.48505 * 109.46854 * 60.00390 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 H 1.08998 * 110.43360 * 59.30153 * 13 11 10 15 15 C 1.54262 * 110.48582 * 296.75410 * 13 11 10 16 16 C 1.53876 * 106.59774 * 217.71064 * 15 13 11 17 17 C 1.54265 * 106.59940 * 0.02562 * 16 15 13 18 18 H 1.09009 * 110.48489 * 264.79606 * 17 16 15 19 19 N 1.46899 * 110.48936 * 142.28620 * 17 16 15 20 20 C 1.54890 * 110.48299 * 181.83644 * 13 11 10 21 21 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 24 24 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 25 25 H 1.08995 * 110.03834 * 336.99911 * 15 13 11 26 26 H 1.09001 * 110.03349 * 98.43396 * 15 13 11 27 27 H 1.09000 * 110.03011 * 119.28649 * 16 15 13 28 28 H 1.08995 * 110.03460 * 240.67048 * 16 15 13 29 29 H 1.00895 * 111.00254 * 61.45061 * 19 17 16 30 30 H 1.00903 * 111.00038 * 185.40401 * 19 17 16 31 31 H 1.08998 * 110.75740 * 274.93675 * 20 13 11 32 32 H 1.08998 * 110.75551 * 38.30964 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 1 3.3767 -5.9796 0.8766 15 6 3.5781 -6.0159 -1.2921 16 6 3.7772 -7.4857 -1.7019 17 6 3.0455 -8.3404 -0.6465 18 1 3.7402 -8.6689 0.1267 19 7 2.3989 -9.4973 -1.2802 20 6 1.9829 -7.3832 -0.0487 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 3.0502 -5.4771 -2.0789 26 1 4.5437 -5.5475 -1.1013 27 1 3.3458 -7.6601 -2.6876 28 1 4.8393 -7.7302 -1.7108 29 1 3.0807 -10.0950 -1.7230 30 1 1.8455 -10.0129 -0.6124 31 1 1.6945 -7.7001 0.9536 32 1 1.1117 -7.3199 -0.7007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085009794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -61.940394 kcal Electronic energy + Delta-G solvation = -13961.117693 eV Core-core repulsion = 11534.285735 eV Total energy + Delta-G solvation = -2426.831957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46497 -37.26694 -34.14148 -32.88205 -32.16246 -28.89902 -27.64430 -26.13546 -22.88171 -21.15118 -19.98388 -19.23752 -17.19473 -16.21656 -15.58651 -15.35822 -15.15828 -14.79683 -14.23385 -13.72345 -13.43492 -12.96124 -12.07214 -11.84930 -11.78540 -11.47375 -11.09729 -10.98764 -10.94925 -10.90359 -10.76205 -10.47981 -10.27703 -9.35621 -8.91639 -8.81145 -8.71769 -7.83361 -6.15027 -4.21746 3.24361 3.31342 3.34507 3.43065 4.08068 4.34835 4.41324 4.60202 4.80370 5.02426 5.21094 5.35950 5.45022 5.56083 5.63075 5.65610 5.89391 5.95436 6.05314 6.21540 6.30039 6.50934 7.08978 7.31120 7.34575 7.49291 7.54940 7.69769 7.99515 8.67988 8.81237 9.16224 9.45193 10.95316 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.069347 B = 0.005815 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.669762 B = 4814.331230 C = 5083.492657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.712 5.712 11 C 0.504 3.496 12 O -0.556 6.556 13 C -0.115 4.115 14 H 0.093 0.907 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.081 3.919 18 H 0.039 0.961 19 N -0.843 5.843 20 C -0.096 4.096 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.338 0.662 30 H 0.341 0.659 31 H 0.064 0.936 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.451 -14.059 -0.946 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.360 5.360 11 C 0.289 3.711 12 O -0.435 6.435 13 C -0.137 4.137 14 H 0.111 0.889 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.030 4.030 18 H 0.057 0.943 19 N -0.373 5.373 20 C -0.134 4.134 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.222 0.778 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.049 -13.509 -1.404 15.787 hybrid contribution 1.472 0.521 0.740 1.728 sum 9.521 -12.987 -0.664 16.117 Atomic orbital electron populations 1.69991 1.06117 1.27151 1.49070 1.24960 0.94904 0.99454 0.94737 0.86365 0.79825 0.82998 0.77742 1.19644 1.20800 1.20808 1.21273 0.93281 0.90484 1.52981 0.91875 1.19103 0.88393 0.82094 0.97684 1.46458 1.11007 1.06182 1.72362 1.20339 0.89273 0.84275 0.77212 1.90646 1.16958 1.84905 1.50981 1.22124 0.97177 0.94691 0.99683 0.88865 1.22052 0.99582 0.96682 0.96660 1.22162 0.99315 0.94308 0.99685 1.22268 0.94840 0.91214 0.94682 0.94315 1.58728 1.28928 1.12651 1.36991 1.22376 0.98252 0.91577 1.01191 0.92523 0.95577 0.95626 0.77774 0.90889 0.91150 0.90573 0.92136 0.85022 0.84647 0.91718 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.71 -15.33 5.51 -61.47 -0.34 -15.66 16 11 C 0.50 10.35 7.01 -10.98 -0.08 10.27 16 12 O -0.56 -13.80 15.73 5.56 0.09 -13.72 16 13 C -0.11 -1.69 3.25 -90.11 -0.29 -1.99 16 14 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.42 6.34 -25.61 -0.16 -1.58 16 16 C -0.12 -1.28 6.53 -25.61 -0.17 -1.45 16 17 C 0.08 0.89 3.99 -65.99 -0.26 0.63 16 18 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 19 N -0.84 -8.36 9.26 -3.20 -0.03 -8.39 16 20 C -0.10 -1.35 5.60 -24.67 -0.14 -1.49 16 21 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 25 H 0.07 1.06 7.83 -51.93 -0.41 0.66 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.34 2.64 9.07 -39.29 -0.36 2.29 16 30 H 0.34 2.96 9.06 -39.29 -0.36 2.61 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -32.31 270.22 -6.80 -39.10 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.76 Total: 6.74 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.55 Total: -2.45 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.37 Total: -49.72 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.31 -6.80 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.837 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds