Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48494 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00572 * 3 2 1 6 6 H 1.48505 * 109.46854 * 60.00390 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 H 1.08998 * 110.43360 * 59.30153 * 13 11 10 15 15 C 1.54262 * 110.48582 * 296.75410 * 13 11 10 16 16 C 1.53876 * 106.59774 * 217.71064 * 15 13 11 17 17 C 1.54265 * 106.59940 * 0.02562 * 16 15 13 18 18 H 1.09009 * 110.48489 * 264.79606 * 17 16 15 19 19 N 1.46899 * 110.48936 * 142.28620 * 17 16 15 20 20 C 1.54890 * 110.48299 * 181.83644 * 13 11 10 21 21 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 24 24 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 25 25 H 1.08995 * 110.03834 * 336.99911 * 15 13 11 26 26 H 1.09001 * 110.03349 * 98.43396 * 15 13 11 27 27 H 1.09000 * 110.03011 * 119.28649 * 16 15 13 28 28 H 1.08995 * 110.03460 * 240.67048 * 16 15 13 29 29 H 1.00895 * 111.00254 * 61.45061 * 19 17 16 30 30 H 1.00903 * 111.00038 * 185.40401 * 19 17 16 31 31 H 1.08998 * 110.75740 * 274.93675 * 20 13 11 32 32 H 1.08998 * 110.75551 * 38.30964 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 1 3.3767 -5.9796 0.8766 15 6 3.5781 -6.0159 -1.2921 16 6 3.7772 -7.4857 -1.7019 17 6 3.0455 -8.3404 -0.6465 18 1 3.7402 -8.6689 0.1267 19 7 2.3989 -9.4973 -1.2802 20 6 1.9829 -7.3832 -0.0487 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 3.0502 -5.4771 -2.0789 26 1 4.5437 -5.5475 -1.1013 27 1 3.3458 -7.6601 -2.6876 28 1 4.8393 -7.7302 -1.7108 29 1 3.0807 -10.0950 -1.7230 30 1 1.8455 -10.0129 -0.6124 31 1 1.6945 -7.7001 0.9536 32 1 1.1117 -7.3199 -0.7007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085009794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -87.797466 kcal Electronic energy + Delta-G solvation = -13962.238939 eV Core-core repulsion = 11534.285735 eV Total energy + Delta-G solvation = -2427.953204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97294 -38.54221 -36.15145 -34.43647 -33.64234 -30.12216 -29.34359 -27.45978 -24.79359 -22.65923 -20.95221 -20.82303 -18.90264 -17.72962 -17.11200 -16.90714 -16.32331 -16.09030 -15.91322 -15.26905 -14.71987 -14.40802 -14.06953 -13.84629 -13.05515 -12.85002 -12.73947 -12.66434 -12.22239 -12.13322 -11.99749 -11.83853 -11.49967 -11.40934 -10.82478 -10.65679 -9.83638 -9.56215 -8.30005 -6.46999 1.42963 1.44402 1.58000 1.76524 2.32173 2.59333 3.04951 3.46727 3.56813 3.69215 4.09931 4.28633 4.44489 4.50761 4.52217 4.56897 4.84093 4.96833 5.10473 5.14510 5.21501 5.24061 5.33707 5.37234 5.48893 5.69699 5.84061 6.34305 6.64505 6.67792 6.91209 7.22654 7.49838 8.82705 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.069347 B = 0.005815 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.669762 B = 4814.331230 C = 5083.492657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.705 5.705 11 C 0.498 3.502 12 O -0.606 6.606 13 C -0.104 4.104 14 H 0.127 0.873 15 C -0.109 4.109 16 C -0.112 4.112 17 C 0.091 3.909 18 H 0.064 0.936 19 N -0.856 5.856 20 C -0.099 4.099 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.014 1.014 24 H 0.408 0.592 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.352 0.648 30 H 0.348 0.652 31 H 0.068 0.932 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 -14.434 -0.779 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.355 5.355 11 C 0.286 3.714 12 O -0.489 6.489 13 C -0.125 4.125 14 H 0.145 0.855 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.020 4.020 18 H 0.082 0.918 19 N -0.388 5.388 20 C -0.138 4.138 21 H 0.078 0.922 22 H 0.002 0.998 23 H 0.004 0.996 24 H 0.244 0.756 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.407 -13.925 -1.243 18.044 hybrid contribution 0.360 0.573 0.682 0.961 sum 11.767 -13.353 -0.561 17.806 Atomic orbital electron populations 1.70156 1.08384 1.28530 1.50070 1.26105 0.95774 1.04028 0.93792 0.85077 0.79111 0.77131 0.77681 1.17485 1.20471 1.20408 1.21650 0.94331 0.90483 1.52789 0.89692 1.18551 0.88821 0.84636 0.93885 1.46204 1.11094 1.05526 1.72636 1.21491 0.89730 0.85071 0.75080 1.90620 1.19775 1.85631 1.52842 1.22171 0.96211 0.91789 1.02371 0.85509 1.22090 0.99988 0.98222 0.94451 1.22155 1.01139 0.92715 0.98947 1.22171 0.93801 0.90880 0.95172 0.91770 1.58653 1.29671 1.12972 1.37467 1.22370 0.98018 0.92432 1.00958 0.92244 0.99793 0.99624 0.75591 0.93525 0.88255 0.91680 0.89018 0.83379 0.83913 0.91317 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.13 5.46 84.66 0.46 0.60 16 3 Si 0.99 42.60 29.54 68.60 2.03 44.63 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.64 9.28 25.60 0.24 -30.40 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.26 14.94 5.43 85.63 0.46 15.40 16 10 N -0.71 -30.78 5.51 -466.79 -2.57 -33.36 16 11 C 0.50 20.89 7.01 87.66 0.61 21.50 16 12 O -0.61 -31.79 15.73 -3.01 -0.05 -31.83 16 13 C -0.10 -2.90 3.25 -10.46 -0.03 -2.94 16 14 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 15 C -0.11 -2.52 6.34 31.32 0.20 -2.32 16 16 C -0.11 -2.10 6.53 31.32 0.20 -1.89 16 17 C 0.09 1.74 3.99 46.03 0.18 1.93 16 18 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 19 N -0.86 -15.17 9.26 -164.05 -1.52 -16.69 16 20 C -0.10 -2.71 5.60 31.93 0.18 -2.53 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 23 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 24 H 0.41 14.61 8.32 -92.71 -0.77 13.84 16 25 H 0.05 1.32 7.83 -2.39 -0.02 1.30 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.39 8.04 -2.39 -0.02 1.37 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.35 4.54 9.07 -89.70 -0.81 3.73 16 30 H 0.35 5.42 9.06 -89.69 -0.81 4.61 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.88 7.49 -2.39 -0.02 1.86 16 Total: -1.00 -73.83 270.22 -0.58 -74.41 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -1.26 Total: 20.38 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 2.51 Total: -0.66 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.81 Total: -106.92 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.83 -0.58 -74.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.386 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds