Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.08991 * 110.43185 * 59.29879 * 13 11 10 15 15 C 1.54889 * 110.48162 * 296.76063 * 13 11 10 16 16 C 1.54899 * 102.74578 * 203.37948 * 15 13 11 17 17 C 1.54260 * 104.19349 * 37.94094 * 16 15 13 18 18 H 1.09001 * 110.03801 * 95.72560 * 17 16 15 19 19 N 1.46906 * 110.03286 * 217.10803 * 17 16 15 20 20 C 1.54085 * 106.62635 * 336.28118 * 17 16 15 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 25 25 H 1.08999 * 110.75789 * 321.69084 * 15 13 11 26 26 H 1.08996 * 110.75779 * 85.06400 * 15 13 11 27 27 H 1.08992 * 110.48789 * 156.62236 * 16 15 13 28 28 H 1.09003 * 110.48038 * 279.13202 * 16 15 13 29 29 H 1.00905 * 110.99505 * 298.54680 * 19 17 16 30 30 H 1.00893 * 110.99963 * 62.50001 * 19 17 16 31 31 H 1.09000 * 110.16156 * 240.88499 * 20 17 16 32 32 H 1.08994 * 110.00940 * 119.38179 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 1 3.3767 -5.9788 0.8799 15 6 3.5821 -6.0168 -1.2939 16 6 4.0406 -7.4913 -1.4157 17 6 2.8176 -8.3075 -0.9490 18 1 2.2268 -8.6203 -1.8100 19 7 3.2585 -9.4839 -0.1876 20 6 1.9862 -7.3777 -0.0443 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 3.1568 -3.4353 0.0009 25 1 2.9739 -5.7293 -2.1515 26 1 4.4400 -5.3530 -1.1874 27 1 4.2864 -7.7301 -2.4503 28 1 4.8969 -7.6792 -0.7680 29 1 3.8244 -10.0933 -0.7591 30 1 3.7532 -9.2093 0.6478 31 1 1.9119 -7.7977 0.9588 32 1 0.9909 -7.2392 -0.4662 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085009795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -66.163767 kcal Electronic energy + Delta-G solvation = -14013.271928 eV Core-core repulsion = 11586.256831 eV Total energy + Delta-G solvation = -2427.015096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.65712 -37.50016 -34.43303 -32.87395 -32.21446 -28.94507 -27.44925 -25.90334 -22.92280 -21.42684 -20.30668 -19.21468 -17.60340 -16.74731 -15.74622 -15.65673 -14.93119 -14.40396 -13.85103 -13.65858 -13.42907 -13.07869 -12.47657 -12.33765 -12.06413 -11.59400 -11.23634 -11.06223 -11.00086 -10.86603 -10.77806 -10.62284 -10.19022 -9.14097 -8.83763 -8.78456 -8.69132 -8.00740 -6.52811 -4.26399 3.27163 3.36278 3.39819 3.55413 3.99886 4.31152 4.44020 4.56249 4.64413 4.96645 5.26151 5.28866 5.34873 5.46288 5.48951 5.54468 5.65078 5.81195 5.91001 6.16019 6.21086 6.43896 6.98194 7.01002 7.21146 7.26809 7.32000 7.65211 8.25620 8.46296 8.70746 8.98215 9.47722 10.87416 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.068557 B = 0.005861 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.318443 B = 4776.003619 C = 5057.161787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.238 3.762 10 N -0.706 5.706 11 C 0.504 3.496 12 O -0.557 6.557 13 C -0.116 4.116 14 H 0.094 0.906 15 C -0.111 4.111 16 C -0.157 4.157 17 C 0.086 3.914 18 H 0.084 0.916 19 N -0.844 5.844 20 C -0.105 4.105 21 H 0.273 0.727 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.392 0.608 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.337 0.663 30 H 0.339 0.661 31 H 0.073 0.927 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -13.386 -1.660 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.117 3.883 10 N -0.354 5.354 11 C 0.289 3.711 12 O -0.436 6.436 13 C -0.138 4.138 14 H 0.112 0.888 15 C -0.149 4.149 16 C -0.197 4.197 17 C -0.026 4.026 18 H 0.102 0.898 19 N -0.372 5.372 20 C -0.143 4.143 21 H 0.083 0.917 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.225 0.775 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.092 0.908 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.666 -12.045 -1.591 14.924 hybrid contribution 1.704 -1.158 -0.140 2.066 sum 10.370 -13.204 -1.731 16.878 Atomic orbital electron populations 1.70730 1.06887 1.31081 1.45002 1.25884 0.96426 1.02755 0.93288 0.83407 0.74498 0.74609 0.76873 1.21265 1.21384 1.20767 1.22089 0.94546 0.91525 1.57976 0.92489 1.19172 0.89090 0.83650 0.96407 1.46271 1.10939 1.05848 1.72335 1.20413 0.89363 0.84363 0.76986 1.90634 1.17031 1.84819 1.51147 1.22168 0.97135 0.94686 0.99789 0.88831 1.22410 0.99121 0.96425 0.96947 1.23233 0.98580 0.96275 1.01573 1.22192 0.94816 0.89402 0.96153 0.89812 1.58963 1.49143 1.18830 1.10309 1.22137 0.99941 0.91658 1.00559 0.91671 0.96593 0.96591 0.77500 0.90714 0.90888 0.91464 0.91620 0.85031 0.84771 0.90812 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.65 55.43 0.76 -26.74 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.50 29.90 -169.99 -5.08 19.42 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.62 -17.25 9.28 -34.44 -0.32 -17.57 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.10 16 9 C 0.24 6.37 4.74 -5.19 -0.02 6.35 16 10 N -0.71 -15.12 5.51 -61.47 -0.34 -15.46 16 11 C 0.50 10.15 7.14 -10.98 -0.08 10.07 16 12 O -0.56 -13.50 15.44 5.56 0.09 -13.42 16 13 C -0.12 -1.66 3.25 -90.11 -0.29 -1.95 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.34 6.29 -24.73 -0.16 -1.49 16 16 C -0.16 -1.52 6.51 -25.07 -0.16 -1.68 16 17 C 0.09 0.93 4.05 -66.48 -0.27 0.66 16 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 19 N -0.84 -7.87 9.14 -3.62 -0.03 -7.90 16 20 C -0.10 -1.44 5.91 -25.50 -0.15 -1.59 16 21 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 22 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 23 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 24 H 0.39 7.30 8.32 -40.82 -0.34 6.96 16 25 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 29 H 0.34 2.50 9.06 -39.29 -0.36 2.15 16 30 H 0.34 2.84 8.93 -39.30 -0.35 2.49 16 31 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 32 H 0.09 1.46 6.87 -51.93 -0.36 1.10 16 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -32.37 268.15 -6.78 -39.15 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.66 Total: 7.58 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.55 Total: -6.68 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.38 Total: -50.11 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.37 -6.78 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.011 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds