Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.08991 * 110.43185 * 59.29879 * 13 11 10 15 15 C 1.54889 * 110.48162 * 296.76063 * 13 11 10 16 16 C 1.54899 * 102.74578 * 203.37948 * 15 13 11 17 17 C 1.54260 * 104.19349 * 37.94094 * 16 15 13 18 18 H 1.09001 * 110.03801 * 95.72560 * 17 16 15 19 19 N 1.46906 * 110.03286 * 217.10803 * 17 16 15 20 20 C 1.54085 * 106.62635 * 336.28118 * 17 16 15 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 25 25 H 1.08999 * 110.75789 * 321.69084 * 15 13 11 26 26 H 1.08996 * 110.75779 * 85.06400 * 15 13 11 27 27 H 1.08992 * 110.48789 * 156.62236 * 16 15 13 28 28 H 1.09003 * 110.48038 * 279.13202 * 16 15 13 29 29 H 1.00905 * 110.99505 * 298.54680 * 19 17 16 30 30 H 1.00893 * 110.99963 * 62.50001 * 19 17 16 31 31 H 1.09000 * 110.16156 * 240.88499 * 20 17 16 32 32 H 1.08994 * 110.00940 * 119.38179 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 1 3.3767 -5.9788 0.8799 15 6 3.5821 -6.0168 -1.2939 16 6 4.0406 -7.4913 -1.4157 17 6 2.8176 -8.3075 -0.9490 18 1 2.2268 -8.6203 -1.8100 19 7 3.2585 -9.4839 -0.1876 20 6 1.9862 -7.3777 -0.0443 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 3.1568 -3.4353 0.0009 25 1 2.9739 -5.7293 -2.1515 26 1 4.4400 -5.3530 -1.1874 27 1 4.2864 -7.7301 -2.4503 28 1 4.8969 -7.6792 -0.7680 29 1 3.8244 -10.0933 -0.7591 30 1 3.7532 -9.2093 0.6478 31 1 1.9119 -7.7977 0.9588 32 1 0.9909 -7.2392 -0.4662 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085009795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -91.875014 kcal Electronic energy + Delta-G solvation = -14014.386851 eV Core-core repulsion = 11586.256831 eV Total energy + Delta-G solvation = -2428.130020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.13096 -38.75583 -36.45982 -34.55991 -33.53742 -30.03814 -29.10632 -27.30848 -24.92327 -22.81862 -21.37422 -20.68379 -19.34589 -18.29540 -16.98060 -16.85192 -16.58118 -15.87388 -15.62704 -15.02503 -14.60620 -14.55220 -14.35903 -13.95166 -13.30009 -13.13139 -12.90045 -12.57069 -12.21718 -12.14618 -11.89830 -11.78807 -11.65744 -11.02300 -10.78520 -10.75547 -10.00216 -9.56026 -8.82149 -6.57863 1.54858 1.62227 1.65333 1.81624 2.35910 2.57304 3.06298 3.38632 3.54536 3.73329 3.86719 4.29762 4.39289 4.41187 4.43915 4.51215 4.65215 4.77938 4.90753 4.92738 5.02358 5.16528 5.26178 5.32777 5.43992 5.52194 6.05324 6.28021 6.28670 6.67181 6.76440 7.21084 7.38343 8.57154 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.068557 B = 0.005861 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.318443 B = 4776.003619 C = 5057.161787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.033 4.033 3 Si 1.133 2.867 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.251 3.749 10 N -0.701 5.701 11 C 0.499 3.501 12 O -0.605 6.605 13 C -0.104 4.104 14 H 0.123 0.877 15 C -0.110 4.110 16 C -0.143 4.143 17 C 0.094 3.906 18 H 0.077 0.923 19 N -0.848 5.848 20 C -0.105 4.105 21 H 0.253 0.747 22 H -0.019 1.019 23 H -0.019 1.019 24 H 0.409 0.591 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.352 0.648 30 H 0.348 0.652 31 H 0.075 0.925 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.874 -13.864 -1.702 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.231 4.231 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.666 4.666 8 H 0.095 0.905 9 C 0.127 3.873 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.487 6.487 13 C -0.125 4.125 14 H 0.141 0.859 15 C -0.148 4.148 16 C -0.182 4.182 17 C -0.018 4.018 18 H 0.096 0.904 19 N -0.379 5.379 20 C -0.144 4.144 21 H 0.062 0.938 22 H -0.001 1.001 23 H -0.001 1.001 24 H 0.245 0.755 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.059 -12.579 -1.633 17.502 hybrid contribution 0.606 -1.099 -0.115 1.260 sum 12.665 -13.678 -1.748 18.723 Atomic orbital electron populations 1.70883 1.08335 1.29889 1.47502 1.27690 0.96322 1.07253 0.91871 0.82751 0.74171 0.69865 0.77973 1.19570 1.18339 1.21080 1.22448 0.95577 0.91652 1.56969 0.90495 1.18690 0.89496 0.85872 0.93237 1.46051 1.10948 1.05254 1.72761 1.21550 0.89837 0.85056 0.74898 1.90615 1.19732 1.85498 1.52840 1.22209 0.96111 0.91715 1.02487 0.85895 1.22452 0.98914 0.98911 0.94536 1.23168 0.98377 0.93575 1.03071 1.22005 0.95009 0.89572 0.95257 0.90442 1.58869 1.50000 1.18288 1.10757 1.22106 0.98770 0.92285 1.01198 0.93781 1.00071 1.00067 0.75489 0.92701 0.88938 0.89935 0.89329 0.83435 0.83851 0.90601 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.65 21.45 0.29 -58.01 16 2 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 3 Si 1.13 48.03 29.90 68.60 2.05 50.08 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.63 -34.83 9.28 25.60 0.24 -34.59 16 8 H 0.08 3.88 7.60 -2.91 -0.02 3.86 16 9 C 0.25 13.92 4.74 85.64 0.41 14.33 16 10 N -0.70 -30.22 5.51 -466.77 -2.57 -32.79 16 11 C 0.50 20.39 7.14 87.66 0.63 21.02 16 12 O -0.60 -30.81 15.44 -3.03 -0.05 -30.86 16 13 C -0.10 -2.81 3.25 -10.46 -0.03 -2.85 16 14 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 15 C -0.11 -2.37 6.29 31.89 0.20 -2.17 16 16 C -0.14 -2.22 6.51 31.67 0.21 -2.01 16 17 C 0.09 1.82 4.05 45.71 0.19 2.01 16 18 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 19 N -0.85 -13.37 9.14 -165.37 -1.51 -14.88 16 20 C -0.11 -2.82 5.91 31.39 0.19 -2.63 16 21 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 22 H -0.02 -1.15 8.01 -2.39 -0.02 -1.16 16 23 H -0.02 -1.14 8.01 -2.38 -0.02 -1.16 16 24 H 0.41 14.65 8.32 -92.71 -0.77 13.88 16 25 H 0.05 1.41 8.05 -2.39 -0.02 1.39 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.05 8.04 -2.39 -0.02 1.03 16 29 H 0.35 4.04 9.06 -89.69 -0.81 3.22 16 30 H 0.35 4.63 8.93 -89.70 -0.80 3.83 16 31 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 32 H 0.05 1.82 6.87 -2.39 -0.02 1.80 16 Total: -1.00 -73.34 268.15 -0.46 -73.79 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -1.15 Total: 20.97 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 2.47 Total: -8.31 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.79 Total: -105.68 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.05 Total: 50.08 kcal Total: -73.34 -0.46 -73.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.082 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds