Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86794 * 120.00223 * 2 1 4 4 H 1.48504 * 109.47140 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47387 * 29.99877 * 3 2 1 6 6 H 1.48507 * 109.47363 * 150.00003 * 3 2 1 7 7 C 1.37886 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99879 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00088 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99878 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00544 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99780 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.67290 * 300.70312 * 13 11 10 15 15 C 1.54890 * 110.75436 * 63.94047 * 13 11 10 16 16 C 1.54265 * 104.19669 * 156.44274 * 15 13 11 17 17 C 1.53872 * 106.59766 * 336.38751 * 16 15 13 18 18 H 1.08997 * 110.02967 * 240.71935 * 17 16 15 19 19 N 1.46897 * 110.03548 * 119.33482 * 17 16 15 20 20 C 1.54757 * 106.65180 * 0.02562 * 17 16 15 21 21 H 0.96998 * 120.00315 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47135 * 60.00362 * 9 7 2 23 23 H 1.09001 * 109.47690 * 300.00302 * 9 7 2 24 24 H 0.96998 * 119.99476 * 0.02562 * 10 9 7 25 25 H 1.09005 * 110.48480 * 275.11904 * 15 13 11 26 26 H 1.08999 * 110.48784 * 37.75827 * 15 13 11 27 27 H 1.08995 * 110.03379 * 95.67248 * 16 15 13 28 28 H 1.09001 * 110.03039 * 217.10101 * 16 15 13 29 29 H 1.00905 * 110.99778 * 61.44737 * 19 17 16 30 30 H 1.00894 * 111.00509 * 185.40378 * 19 17 16 31 31 H 1.08998 * 110.50261 * 265.01092 * 20 17 16 32 32 H 1.09001 * 110.68900 * 142.21812 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3248 -2.8216 0.0001 12 8 6.1129 -1.8999 0.0006 13 6 5.8271 -4.2425 0.0008 14 1 5.4645 -4.7784 0.8780 15 6 5.4101 -4.9728 -1.2999 16 6 6.4430 -6.1096 -1.4434 17 6 7.6917 -5.6705 -0.6588 18 1 8.5489 -5.6031 -1.3286 19 7 7.9705 -6.6276 0.4201 20 6 7.3741 -4.2780 -0.0629 21 1 -0.4850 0.8400 -0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8905 24 1 3.3694 -3.3126 0.0001 25 1 4.4042 -5.3813 -1.2023 26 1 5.4668 -4.2959 -2.1524 27 1 6.0433 -7.0324 -1.0231 28 1 6.6942 -6.2554 -2.4940 29 1 8.1586 -7.5467 0.0485 30 1 8.7331 -6.3084 0.9985 31 1 7.7468 -3.4891 -0.7163 32 1 7.7997 -4.1803 0.9358 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085009797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -57.567689 kcal Electronic energy + Delta-G solvation = -14025.859169 eV Core-core repulsion = 11599.216827 eV Total energy + Delta-G solvation = -2426.642342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.55187 -37.42100 -34.25282 -32.76821 -32.19446 -29.03976 -28.07062 -26.41843 -22.65092 -21.14151 -19.84738 -19.38621 -17.42568 -16.34890 -15.83926 -15.33828 -15.17008 -14.78854 -14.29940 -13.79582 -13.46151 -12.98560 -12.40582 -12.17000 -11.69994 -11.55593 -11.24864 -11.08445 -11.04568 -10.83951 -10.71035 -10.59353 -9.94916 -9.46875 -9.07281 -8.81114 -8.75597 -8.09423 -6.19556 -4.21424 3.27008 3.31163 3.34646 3.43603 4.04638 4.35284 4.37842 4.57382 4.60522 5.05884 5.15826 5.35913 5.39267 5.52867 5.62661 5.68630 5.85927 5.89413 5.97223 6.13442 6.23935 6.39885 6.84960 7.04353 7.10433 7.26695 7.28410 7.43389 8.17432 8.57154 8.78105 9.00174 9.41087 10.92502 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063951 B = 0.006301 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.732143 B = 4442.950989 C = 4704.245341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.705 5.705 11 C 0.506 3.494 12 O -0.562 6.562 13 C -0.108 4.108 14 H 0.101 0.899 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.083 3.917 18 H 0.036 0.964 19 N -0.844 5.844 20 C -0.095 4.095 21 H 0.267 0.733 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.396 0.604 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.337 0.663 30 H 0.340 0.660 31 H 0.080 0.920 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.133 -12.242 -1.676 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.442 6.442 13 C -0.129 4.129 14 H 0.119 0.881 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.028 4.028 18 H 0.054 0.946 19 N -0.374 5.374 20 C -0.134 4.134 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.230 0.770 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.752 -11.270 -1.439 17.080 hybrid contribution 0.872 0.449 -0.431 1.071 sum 13.624 -10.822 -1.870 17.499 Atomic orbital electron populations 1.69878 1.06212 1.27389 1.49572 1.24797 0.94779 0.99158 0.93895 0.86815 0.80584 0.83257 0.79020 1.19875 1.20907 1.18535 1.21109 0.88573 0.95211 1.53147 0.90253 1.19483 0.95212 0.78963 0.96668 1.46191 1.05854 1.10866 1.72323 1.20496 0.83012 0.90692 0.76718 1.90624 1.55668 1.46506 1.51408 1.22211 0.96978 0.93611 1.00137 0.88053 1.22291 0.99133 0.96761 0.96698 1.22201 0.94904 0.99139 0.99202 1.22110 0.96612 0.92576 0.91546 0.94579 1.58848 1.49426 1.05282 1.23882 1.22311 0.94198 0.95129 1.01731 0.92290 0.95796 0.96278 0.77009 0.90735 0.91144 0.90674 0.91861 0.85029 0.84743 0.90168 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.52 4.50 -5.20 -0.02 5.49 16 10 N -0.70 -14.69 5.53 -61.47 -0.34 -15.03 16 11 C 0.51 9.92 7.14 -10.99 -0.08 9.84 16 12 O -0.56 -13.10 15.76 5.56 0.09 -13.01 16 13 C -0.11 -1.57 3.27 -89.79 -0.29 -1.86 16 14 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.11 -1.37 6.25 -25.07 -0.16 -1.53 16 16 C -0.12 -1.19 6.58 -25.61 -0.17 -1.36 16 17 C 0.08 0.86 4.04 -66.33 -0.27 0.59 16 18 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 19 N -0.84 -7.58 9.12 -3.50 -0.03 -7.61 16 20 C -0.10 -1.27 5.60 -24.82 -0.14 -1.41 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.64 7.20 -51.92 -0.37 0.27 16 23 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 24 H 0.40 7.34 8.32 -40.82 -0.34 7.00 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 27 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.34 2.40 9.06 -39.29 -0.36 2.05 16 30 H 0.34 2.69 8.93 -39.29 -0.35 2.34 16 31 H 0.08 1.19 7.49 -51.93 -0.39 0.80 16 32 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 LS Contribution 266.48 15.07 4.02 4.02 Total: -1.00 -32.04 266.48 -6.44 -38.48 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.71 Total: 5.65 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.56 Total: -3.56 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.40 Total: -48.63 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.04 -6.44 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds