Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86794 * 120.00223 * 2 1 4 4 H 1.48504 * 109.47140 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47387 * 29.99877 * 3 2 1 6 6 H 1.48507 * 109.47363 * 150.00003 * 3 2 1 7 7 C 1.37886 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99879 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00088 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99878 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00544 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99780 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.67290 * 300.70312 * 13 11 10 15 15 C 1.54890 * 110.75436 * 63.94047 * 13 11 10 16 16 C 1.54265 * 104.19669 * 156.44274 * 15 13 11 17 17 C 1.53872 * 106.59766 * 336.38751 * 16 15 13 18 18 H 1.08997 * 110.02967 * 240.71935 * 17 16 15 19 19 N 1.46897 * 110.03548 * 119.33482 * 17 16 15 20 20 C 1.54757 * 106.65180 * 0.02562 * 17 16 15 21 21 H 0.96998 * 120.00315 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47135 * 60.00362 * 9 7 2 23 23 H 1.09001 * 109.47690 * 300.00302 * 9 7 2 24 24 H 0.96998 * 119.99476 * 0.02562 * 10 9 7 25 25 H 1.09005 * 110.48480 * 275.11904 * 15 13 11 26 26 H 1.08999 * 110.48784 * 37.75827 * 15 13 11 27 27 H 1.08995 * 110.03379 * 95.67248 * 16 15 13 28 28 H 1.09001 * 110.03039 * 217.10101 * 16 15 13 29 29 H 1.00905 * 110.99778 * 61.44737 * 19 17 16 30 30 H 1.00894 * 111.00509 * 185.40378 * 19 17 16 31 31 H 1.08998 * 110.50261 * 265.01092 * 20 17 16 32 32 H 1.09001 * 110.68900 * 142.21812 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3248 -2.8216 0.0001 12 8 6.1129 -1.8999 0.0006 13 6 5.8271 -4.2425 0.0008 14 1 5.4645 -4.7784 0.8780 15 6 5.4101 -4.9728 -1.2999 16 6 6.4430 -6.1096 -1.4434 17 6 7.6917 -5.6705 -0.6588 18 1 8.5489 -5.6031 -1.3286 19 7 7.9705 -6.6276 0.4201 20 6 7.3741 -4.2780 -0.0629 21 1 -0.4850 0.8400 -0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8905 24 1 3.3694 -3.3126 0.0001 25 1 4.4042 -5.3813 -1.2023 26 1 5.4668 -4.2959 -2.1524 27 1 6.0433 -7.0324 -1.0231 28 1 6.6942 -6.2554 -2.4940 29 1 8.1586 -7.5467 0.0485 30 1 8.7331 -6.3084 0.9985 31 1 7.7468 -3.4891 -0.7163 32 1 7.7997 -4.1803 0.9358 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085009797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -82.814578 kcal Electronic energy + Delta-G solvation = -14026.953957 eV Core-core repulsion = 11599.216827 eV Total energy + Delta-G solvation = -2427.737130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98583 -38.61375 -36.16542 -34.45586 -33.51694 -30.40176 -29.58515 -27.57275 -24.42227 -22.66961 -21.06184 -20.59510 -19.16305 -18.00170 -17.16053 -16.72189 -16.32885 -16.05748 -15.96976 -15.31151 -14.81718 -14.50671 -14.29341 -13.92867 -13.17575 -12.90729 -12.70992 -12.44492 -12.15941 -12.06207 -11.95096 -11.85872 -11.66324 -11.59033 -10.92945 -10.70228 -9.93564 -9.51872 -8.40988 -6.48008 1.31440 1.33629 1.46425 1.72333 2.27109 2.49007 2.94199 3.53330 3.59601 3.65136 3.99167 4.36797 4.43071 4.49952 4.56776 4.60800 4.78459 4.90754 4.97405 5.01081 5.11366 5.18990 5.25070 5.25908 5.38214 5.52915 6.08022 6.34736 6.52821 6.69282 6.84360 7.14668 7.40518 8.73845 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063951 B = 0.006301 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.732143 B = 4442.950989 C = 4704.245341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.230 3.770 10 N -0.704 5.704 11 C 0.504 3.496 12 O -0.600 6.600 13 C -0.100 4.100 14 H 0.115 0.885 15 C -0.110 4.110 16 C -0.109 4.109 17 C 0.091 3.909 18 H 0.047 0.953 19 N -0.848 5.848 20 C -0.096 4.096 21 H 0.273 0.727 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.408 0.592 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.351 0.649 30 H 0.346 0.654 31 H 0.060 0.940 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.313 -13.327 -1.902 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.106 3.894 10 N -0.353 5.353 11 C 0.292 3.708 12 O -0.482 6.482 13 C -0.121 4.121 14 H 0.133 0.867 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.020 4.020 18 H 0.065 0.935 19 N -0.381 5.381 20 C -0.135 4.135 21 H 0.082 0.918 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.243 0.757 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.935 -12.401 -1.667 18.728 hybrid contribution 0.493 0.733 -0.343 0.948 sum 14.427 -11.667 -2.010 18.663 Atomic orbital electron populations 1.69975 1.07658 1.28641 1.50646 1.25593 0.95539 1.02635 0.93535 0.85857 0.79175 0.79367 0.79481 1.18906 1.19640 1.18727 1.21289 0.89888 0.94628 1.52696 0.92249 1.19100 0.93458 0.81308 0.95495 1.46074 1.06913 1.09543 1.72785 1.21410 0.81905 0.92590 0.74897 1.90600 1.56406 1.48365 1.52866 1.22241 0.97877 0.90032 1.01992 0.86693 1.22325 1.00621 0.97121 0.94743 1.22179 0.93897 0.98358 1.00301 1.21971 0.97196 0.91034 0.91844 0.93478 1.58788 1.50043 1.05713 1.23521 1.22306 0.92989 0.96668 1.01509 0.91800 0.97171 0.97195 0.75656 0.89668 0.92376 0.89603 0.90309 0.83515 0.84027 0.92148 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.96 21.45 0.30 -55.75 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.94 44.73 27.47 68.60 1.88 46.61 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 7 C -0.55 -30.78 9.83 25.60 0.25 -30.53 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 9 C 0.23 11.65 4.50 85.63 0.38 12.03 16 10 N -0.70 -29.27 5.53 -466.79 -2.58 -31.85 16 11 C 0.50 19.61 7.14 87.66 0.63 20.23 16 12 O -0.60 -28.11 15.76 -3.02 -0.05 -28.16 16 13 C -0.10 -2.77 3.27 -10.25 -0.03 -2.81 16 14 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 15 C -0.11 -2.50 6.25 31.67 0.20 -2.30 16 16 C -0.11 -1.89 6.58 31.32 0.21 -1.69 16 17 C 0.09 1.65 4.04 45.81 0.19 1.83 16 18 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 19 N -0.85 -12.69 9.12 -164.98 -1.51 -14.20 16 20 C -0.10 -2.43 5.60 31.83 0.18 -2.25 16 21 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.01 0.55 7.20 -2.38 -0.02 0.54 16 23 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 24 H 0.41 14.96 8.32 -92.71 -0.77 14.19 16 25 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 27 H 0.09 1.35 7.92 -2.39 -0.02 1.33 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.35 3.81 9.06 -89.69 -0.81 3.00 16 30 H 0.35 4.57 8.93 -89.70 -0.80 3.77 16 31 H 0.06 1.76 7.49 -2.39 -0.02 1.75 16 32 H 0.07 1.75 7.96 -2.39 -0.02 1.73 16 Total: -1.00 -68.21 266.48 -0.79 -69.00 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -1.30 Total: 17.79 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 2.46 Total: -3.45 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -3.79 Total: -101.80 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -68.21 -0.79 -69.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085009797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.813 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds