Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99683 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99846 * 180.02562 * 15 13 12 17 17 C 1.53003 * 117.49700 * 223.62259 * 16 15 13 18 18 C 1.52999 * 60.00284 * 252.51102 * 17 16 15 19 19 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 26 26 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 27 27 H 0.96998 * 119.99962 * 0.02562 * 15 13 12 28 28 H 1.08997 * 115.55382 * 9.33363 * 16 15 13 29 29 H 1.08994 * 117.49898 * 0.02562 * 17 16 15 30 30 H 1.09003 * 117.49491 * 145.02442 * 17 16 15 31 31 H 1.08997 * 117.50444 * 252.51321 * 18 17 16 32 32 H 1.08998 * 117.52052 * 107.47472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5793 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0742 -0.0028 13 6 7.4472 -4.1145 -0.0034 14 8 8.0815 -3.0808 -0.0029 15 7 8.0897 -5.2993 -0.0034 16 6 9.5541 -5.3384 -0.0034 17 6 10.2340 -6.3394 -0.9398 18 6 10.2275 -6.5869 0.5701 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6807 0.8888 21 1 3.8744 -0.6803 -0.8911 22 1 3.6252 -3.0951 -0.7837 23 1 5.8464 -2.1152 0.8882 24 1 5.8464 -2.1140 -0.8918 25 1 5.5638 -4.5784 0.8871 26 1 5.5638 -4.5778 -0.8929 27 1 7.5824 -6.1260 -0.0034 28 1 10.0500 -4.3810 0.1561 29 1 9.5917 -6.9685 -1.5560 30 1 11.1774 -6.0404 -1.3966 31 1 11.1665 -6.4509 1.1065 32 1 9.5808 -7.3789 0.9478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086275881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -17.753633 kcal Electronic energy + Delta-G solvation = -13350.811106 eV Core-core repulsion = 10925.895231 eV Total energy + Delta-G solvation = -2424.915875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.88783 -37.37713 -35.58834 -33.07092 -32.54276 -30.45051 -26.80971 -23.36949 -22.73693 -21.55093 -21.06426 -20.44955 -17.20541 -16.77275 -16.59057 -15.76112 -14.95257 -14.60770 -14.32420 -13.97674 -13.22227 -13.00215 -12.78622 -12.35126 -12.18670 -11.94549 -11.58595 -11.34347 -10.95494 -10.85506 -10.61828 -10.41588 -9.87952 -9.74096 -9.26896 -8.96593 -8.58030 -7.49946 -6.04498 -4.02483 2.54449 2.91568 3.31836 3.39120 3.43946 3.60875 4.44790 4.45113 4.61292 4.65924 4.68185 5.10538 5.26365 5.27297 5.29164 5.44578 5.55919 5.68488 5.71289 5.80433 6.23584 6.27856 6.41613 6.82258 7.03991 7.32733 7.62124 7.87705 8.15344 8.33407 8.65572 9.02713 9.57707 11.08688 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.084151 B = 0.004541 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.655448 B = 6164.510117 C = 6400.870599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.682 5.682 11 C 0.071 3.929 12 C -0.136 4.136 13 C 0.520 3.480 14 O -0.537 6.537 15 N -0.709 5.709 16 C 0.081 3.919 17 C -0.196 4.196 18 C -0.191 4.191 19 H 0.264 0.736 20 H 0.028 0.972 21 H -0.019 1.019 22 H 0.334 0.666 23 H 0.072 0.928 24 H 0.027 0.973 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.402 0.598 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.265 -13.270 -0.891 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.312 5.312 11 C -0.060 4.060 12 C -0.176 4.176 13 C 0.307 3.693 14 O -0.412 6.412 15 N -0.360 5.360 16 C -0.026 4.026 17 C -0.234 4.234 18 C -0.229 4.229 19 H 0.074 0.926 20 H 0.046 0.954 21 H -0.001 1.001 22 H 0.150 0.850 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.236 0.764 28 H 0.154 0.846 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.483 -12.419 -0.194 22.269 hybrid contribution 0.364 0.635 -0.943 1.194 sum 18.847 -11.784 -1.137 22.257 Atomic orbital electron populations 1.69904 1.06160 1.26902 1.51029 1.24905 0.94770 0.99007 0.94678 0.86815 0.80405 0.83748 0.78529 1.20306 1.21123 1.19049 1.21065 0.88911 0.94827 1.50668 0.90269 1.20007 0.96564 0.84805 0.95012 1.60497 1.04313 1.17138 1.49301 1.21640 0.90153 0.92875 1.01286 1.21656 0.89978 1.01108 1.04892 1.20947 0.90841 0.82878 0.74614 1.90699 1.68933 1.32971 1.48624 1.45476 1.05447 1.09039 1.76028 1.21586 0.81128 0.96203 1.03639 1.23422 1.03175 1.03731 0.93109 1.23371 1.03102 1.00042 0.96431 0.92647 0.95409 1.00122 0.84959 0.90935 0.95433 0.87876 0.88987 0.76351 0.84565 0.88501 0.88087 0.87956 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.03 9.87 -34.44 -0.34 -15.37 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 9 C 0.16 4.12 4.51 -4.97 -0.02 4.10 16 10 N -0.68 -14.25 6.49 -115.06 -0.75 -15.00 16 11 C 0.07 1.26 4.97 -3.82 -0.02 1.24 16 12 C -0.14 -1.76 5.96 -27.88 -0.17 -1.93 16 13 C 0.52 7.02 7.83 -10.99 -0.09 6.94 16 14 O -0.54 -9.48 15.55 5.56 0.09 -9.39 16 15 N -0.71 -6.99 5.57 -53.81 -0.30 -7.29 16 16 C 0.08 0.75 6.43 -67.93 -0.44 0.32 16 17 C -0.20 -1.39 10.46 -26.73 -0.28 -1.67 16 18 C -0.19 -1.29 10.46 -26.73 -0.28 -1.57 16 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 20 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 21 H -0.02 -0.47 7.57 -51.93 -0.39 -0.87 16 22 H 0.33 6.52 8.72 -39.29 -0.34 6.18 16 23 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 24 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.40 2.79 8.83 -40.82 -0.36 2.43 16 28 H 0.14 1.50 7.40 -51.93 -0.38 1.12 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -33.61 276.88 -7.23 -40.84 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.82 Total: 2.46 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.73 Total: -6.02 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.27 Total: -49.51 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.61 -7.23 -40.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086275881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.090 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds