Wall clock time and date at job start Mon Mar 30 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99683 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99846 * 180.02562 * 15 13 12 17 17 C 1.53003 * 117.49700 * 223.62259 * 16 15 13 18 18 C 1.52999 * 60.00284 * 252.51102 * 17 16 15 19 19 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 26 26 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 27 27 H 0.96998 * 119.99962 * 0.02562 * 15 13 12 28 28 H 1.08997 * 115.55382 * 9.33363 * 16 15 13 29 29 H 1.08994 * 117.49898 * 0.02562 * 17 16 15 30 30 H 1.09003 * 117.49491 * 145.02442 * 17 16 15 31 31 H 1.08997 * 117.50444 * 252.51321 * 18 17 16 32 32 H 1.08998 * 117.52052 * 107.47472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5793 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0742 -0.0028 13 6 7.4472 -4.1145 -0.0034 14 8 8.0815 -3.0808 -0.0029 15 7 8.0897 -5.2993 -0.0034 16 6 9.5541 -5.3384 -0.0034 17 6 10.2340 -6.3394 -0.9398 18 6 10.2275 -6.5869 0.5701 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6807 0.8888 21 1 3.8744 -0.6803 -0.8911 22 1 3.6252 -3.0951 -0.7837 23 1 5.8464 -2.1152 0.8882 24 1 5.8464 -2.1140 -0.8918 25 1 5.5638 -4.5784 0.8871 26 1 5.5638 -4.5778 -0.8929 27 1 7.5824 -6.1260 -0.0034 28 1 10.0500 -4.3810 0.1561 29 1 9.5917 -6.9685 -1.5560 30 1 11.1774 -6.0404 -1.3966 31 1 11.1665 -6.4509 1.1065 32 1 9.5808 -7.3789 0.9478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086275881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:58 Heat of formation + Delta-G solvation = -44.231417 kcal Electronic energy + Delta-G solvation = -13351.959269 eV Core-core repulsion = 10925.895231 eV Total energy + Delta-G solvation = -2426.064038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89078 -38.19642 -37.22583 -34.73389 -33.92560 -31.99214 -28.65865 -24.71642 -23.26513 -23.08862 -22.42012 -21.49451 -18.96309 -18.18711 -17.47840 -17.07457 -16.50268 -15.85932 -15.52850 -15.44294 -14.72458 -14.49567 -14.10257 -14.00268 -13.64782 -12.96324 -12.72219 -12.49913 -12.34619 -12.24787 -12.12199 -11.83069 -11.50313 -11.46724 -10.94889 -10.83045 -9.75168 -9.23121 -8.31839 -6.35999 1.33622 1.35617 1.47278 1.53765 2.05077 2.32839 2.99102 3.02062 3.46137 3.80053 3.84770 4.05938 4.06932 4.10396 4.28823 4.62389 4.74678 4.76944 4.84917 4.93536 4.97882 5.02880 5.08490 5.21353 5.50119 5.52152 5.89731 6.47401 6.53429 6.63112 6.74854 7.22122 7.29163 8.84532 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.084151 B = 0.004541 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.655448 B = 6164.510117 C = 6400.870599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.527 4.527 8 H 0.045 0.955 9 C 0.172 3.828 10 N -0.683 5.683 11 C 0.073 3.927 12 C -0.124 4.124 13 C 0.519 3.481 14 O -0.587 6.587 15 N -0.690 5.690 16 C 0.046 3.954 17 C -0.184 4.184 18 C -0.171 4.171 19 H 0.269 0.731 20 H 0.021 0.979 21 H -0.016 1.016 22 H 0.342 0.658 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.419 0.581 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.872 -14.306 -1.076 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.566 4.566 8 H 0.063 0.937 9 C 0.043 3.957 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.164 4.164 13 C 0.307 3.693 14 O -0.467 6.467 15 N -0.341 5.341 16 C -0.060 4.060 17 C -0.222 4.222 18 C -0.209 4.209 19 H 0.078 0.922 20 H 0.039 0.961 21 H 0.001 0.999 22 H 0.160 0.840 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.256 0.744 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.106 -13.533 -0.384 24.239 hybrid contribution -0.132 0.827 -0.884 1.217 sum 19.974 -12.707 -1.267 23.707 Atomic orbital electron populations 1.70037 1.07959 1.28252 1.52192 1.25818 0.95637 1.03090 0.94165 0.85718 0.79227 0.78805 0.79206 1.19088 1.20254 1.18076 1.21316 0.91025 0.93715 1.50513 0.93718 1.19766 0.93999 0.87264 0.94654 1.60366 1.06378 1.14772 1.49879 1.21599 0.87831 0.96184 1.00036 1.21516 0.89817 0.97976 1.07069 1.20961 0.90895 0.83168 0.74265 1.90685 1.69779 1.34837 1.51411 1.45269 1.05982 1.08616 1.74220 1.21638 0.80598 0.96519 1.07243 1.23496 1.03059 1.02063 0.93585 1.23463 1.03059 0.98103 0.96289 0.92245 0.96054 0.99870 0.84019 0.92583 0.96364 0.86167 0.86266 0.74378 0.86985 0.87471 0.87454 0.87030 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 2 C 0.01 0.64 5.47 84.65 0.46 1.11 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.85 6.54 99.48 0.65 -11.19 16 7 C -0.53 -31.09 9.87 25.60 0.25 -30.84 16 8 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 9 C 0.17 8.58 4.51 85.56 0.39 8.97 16 10 N -0.68 -28.09 6.49 -517.94 -3.36 -31.45 16 11 C 0.07 2.56 4.97 86.31 0.43 2.99 16 12 C -0.12 -2.97 5.96 29.85 0.18 -2.79 16 13 C 0.52 13.43 7.83 87.66 0.69 14.12 16 14 O -0.59 -20.87 15.55 -3.04 -0.05 -20.92 16 15 N -0.69 -12.26 5.57 -442.53 -2.46 -14.72 16 16 C 0.05 0.79 6.43 45.00 0.29 1.08 16 17 C -0.18 -2.14 10.46 30.59 0.32 -1.82 16 18 C -0.17 -1.82 10.46 30.60 0.32 -1.51 16 19 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 20 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 21 H -0.02 -0.81 7.57 -2.39 -0.02 -0.82 16 22 H 0.34 13.08 8.72 -89.70 -0.78 12.30 16 23 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 24 H 0.02 0.67 8.10 -2.39 -0.02 0.65 16 25 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.42 4.54 8.83 -92.71 -0.82 3.72 16 28 H 0.11 2.50 7.40 -2.39 -0.02 2.49 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.54 276.88 -0.90 -74.44 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.54 Total: 13.16 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 3.32 Total: -8.69 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -5.52 Total: -105.29 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -73.54 -0.90 -74.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086275881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.208 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds