Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47163 * 240.00110 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.00106 * 3 2 1 7 7 C 1.38815 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99597 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46691 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.52992 * 117.49908 * 223.61922 * 16 15 13 18 18 C 1.52994 * 117.50047 * 154.99430 * 16 15 13 19 19 H 0.97000 * 120.00284 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00327 * 359.97438 * 9 7 2 21 21 H 1.08993 * 109.47068 * 59.99274 * 10 9 7 22 22 H 1.09000 * 109.46872 * 299.99485 * 10 9 7 23 23 H 1.08993 * 109.47839 * 59.99891 * 11 10 9 24 24 H 1.09000 * 109.47160 * 299.99453 * 11 10 9 25 25 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 26 26 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 27 27 H 0.96996 * 119.99844 * 359.97438 * 15 13 12 28 28 H 1.09005 * 115.54704 * 9.32743 * 16 15 13 29 29 H 1.08998 * 117.50095 * 359.97438 * 17 16 15 30 30 H 1.09007 * 117.49624 * 145.02066 * 17 16 15 31 31 H 1.08996 * 117.50255 * 214.98052 * 18 16 15 32 32 H 1.09007 * 117.49803 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8288 -6.1447 0.0026 13 6 0.8495 -7.2902 0.0036 14 8 -0.3429 -7.0685 0.0044 15 7 1.2988 -8.5609 0.0048 16 6 0.3468 -9.6744 0.0052 17 6 0.6341 -10.8490 0.9424 18 6 0.8228 -11.0110 -0.5673 19 1 -0.4850 0.8400 -0.0004 20 1 0.3555 -2.3881 0.0005 21 1 2.6841 -3.7141 0.8920 22 1 2.6853 -3.7149 -0.8879 23 1 0.4374 -4.7626 -0.8881 24 1 0.4368 -4.7614 0.8918 25 1 2.4555 -6.2028 -0.8874 26 1 2.4555 -6.2020 0.8927 27 1 2.2524 -8.7381 0.0046 28 1 -0.6963 -9.4012 -0.1548 29 1 1.5316 -10.7936 1.5584 30 1 -0.2201 -11.3489 1.3993 31 1 0.0929 -11.6174 -1.1035 32 1 1.8442 -11.0617 -0.9446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086275934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = -38.146623 kcal Electronic energy + Delta-G solvation = -13320.872042 eV Core-core repulsion = 10895.071861 eV Total energy + Delta-G solvation = -2425.800182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86088 -38.15176 -37.04660 -34.60293 -33.79946 -32.06844 -27.97683 -25.21371 -23.26514 -23.14501 -22.17490 -21.44305 -19.10949 -18.14628 -17.43091 -16.84073 -16.59364 -15.55672 -15.40347 -15.30741 -15.18676 -14.57378 -13.69009 -13.43767 -13.30849 -12.72724 -12.60949 -12.48112 -12.33090 -12.32617 -12.02272 -11.84687 -11.78192 -11.46990 -10.91531 -10.90602 -9.73331 -9.01142 -7.94359 -5.25000 1.47603 1.52269 1.57918 1.58410 2.10274 2.57645 2.99730 3.38868 3.74315 3.82841 3.85794 4.06962 4.08458 4.15352 4.36418 4.64032 4.75746 4.76797 4.77678 4.87577 4.91419 5.03702 5.21577 5.36456 5.39443 5.49690 5.55261 6.27252 6.54036 7.26733 7.32204 8.09143 8.31560 9.29708 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.111561 B = 0.004191 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 250.923091 B = 6679.147230 C = 6835.737427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.082 0.918 9 N -0.754 5.754 10 C 0.152 3.848 11 C -0.100 4.100 12 C -0.122 4.122 13 C 0.513 3.487 14 O -0.589 6.589 15 N -0.690 5.690 16 C 0.045 3.955 17 C -0.184 4.184 18 C -0.170 4.170 19 H 0.252 0.748 20 H 0.370 0.630 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.419 0.581 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -22.709 0.084 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.100 0.900 9 N -0.397 5.397 10 C 0.026 3.974 11 C -0.139 4.139 12 C -0.162 4.162 13 C 0.302 3.698 14 O -0.469 6.469 15 N -0.342 5.342 16 C -0.061 4.061 17 C -0.222 4.222 18 C -0.208 4.208 19 H 0.060 0.940 20 H 0.202 0.798 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.257 0.743 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.476 -22.452 0.081 23.367 hybrid contribution -0.049 0.978 0.017 0.980 sum 6.427 -21.474 0.098 22.415 Atomic orbital electron populations 1.69850 1.06939 1.26265 1.59462 1.25715 0.96460 1.01600 1.03586 0.85100 0.77083 0.78494 0.78395 1.20037 1.22253 1.20051 1.19701 0.91746 0.85274 1.41442 0.90016 1.42687 1.05696 1.01696 1.89582 1.20853 0.93845 0.84304 0.98442 1.21295 0.97763 0.93345 1.01453 1.21545 0.97540 0.89986 1.07146 1.21184 0.89514 0.84894 0.74212 1.90700 1.19480 1.85431 1.51290 1.45277 1.10426 1.04090 1.74381 1.21622 0.94579 0.82668 1.07280 1.23494 1.04645 1.00491 0.93610 1.23460 1.04070 0.97025 0.96250 0.93980 0.79848 0.95129 0.95100 0.93460 0.93477 0.85872 0.85907 0.74330 0.87283 0.87366 0.87575 0.87122 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.47 13.06 21.65 0.28 -62.18 16 2 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 3 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.75 -40.93 5.60 -343.45 -1.92 -42.86 16 10 C 0.15 6.17 6.26 86.38 0.54 6.71 16 11 C -0.10 -3.55 4.62 30.60 0.14 -3.41 16 12 C -0.12 -2.85 5.70 29.85 0.17 -2.68 16 13 C 0.51 13.74 7.83 87.66 0.69 14.43 16 14 O -0.59 -22.23 15.55 -3.04 -0.05 -22.27 16 15 N -0.69 -12.59 5.57 -442.54 -2.46 -15.06 16 16 C 0.04 0.81 6.43 44.99 0.29 1.10 16 17 C -0.18 -2.27 10.46 30.59 0.32 -1.95 16 18 C -0.17 -1.89 10.45 30.59 0.32 -1.57 16 19 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 20 H 0.37 21.82 7.67 -92.71 -0.71 21.11 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 24 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 25 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.42 4.45 8.83 -92.71 -0.82 3.63 16 28 H 0.11 2.60 7.40 -2.38 -0.02 2.59 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -76.12 279.26 1.24 -74.88 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.41 Total: 23.80 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 3.77 Total: -5.45 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -4.10 Total: -120.10 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.12 1.24 -74.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086275934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.738 kcal (2) G-P(sol) polarization free energy of solvation -76.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds