Wall clock time and date at job start Mon Mar 30 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47193 * 299.99647 * 3 2 1 6 6 H 1.48498 * 109.47190 * 59.99749 * 3 2 1 7 7 C 1.37879 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99325 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46928 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47048 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99775 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00335 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.46906 * 112.84865 * 334.67210 * 14 12 11 16 16 C 1.53781 * 113.61400 * 105.86605 * 14 12 11 17 17 C 1.54052 * 86.98249 * 140.01892 * 16 14 12 18 18 C 1.53780 * 87.08219 * 334.57032 * 17 16 14 19 19 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47648 * 59.99893 * 9 7 2 21 21 H 1.09000 * 109.47048 * 299.99493 * 9 7 2 22 22 H 1.08996 * 109.47248 * 59.99691 * 10 9 7 23 23 H 1.09000 * 109.46919 * 299.99666 * 10 9 7 24 24 H 0.96998 * 119.99585 * 0.02562 * 11 10 9 25 25 H 1.00896 * 111.00309 * 50.33004 * 15 14 12 26 26 H 1.00902 * 110.99923 * 174.29167 * 15 14 12 27 27 H 1.08996 * 113.61535 * 254.61506 * 16 14 12 28 28 H 1.08996 * 113.61155 * 25.51736 * 16 14 12 29 29 H 1.09003 * 113.61808 * 220.01819 * 17 16 14 30 30 H 1.09006 * 113.60959 * 89.11938 * 17 16 14 31 31 H 1.08999 * 113.61093 * 270.88413 * 18 17 16 32 32 H 1.08993 * 113.61732 * 139.97493 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0007 13 8 3.3992 -6.0981 0.0003 14 6 1.4329 -7.4031 0.0020 15 7 0.0886 -7.2851 0.5826 16 6 1.4570 -8.1296 -1.3532 17 6 1.6280 -9.4373 -0.5571 18 6 2.2447 -8.5827 0.5628 19 1 -0.4850 0.8400 -0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8904 23 1 2.8717 -3.6044 -0.8895 24 1 0.5426 -4.9308 0.0011 25 1 -0.4172 -6.5157 0.1700 26 1 -0.4243 -8.1486 0.4855 27 1 0.5150 -8.0685 -1.8982 28 1 2.3203 -7.8770 -1.9687 29 1 2.3311 -10.1360 -1.0108 30 1 0.6839 -9.9060 -0.2792 31 1 3.3231 -8.4538 0.4700 32 1 1.9383 -8.8871 1.5634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088051037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:40 Heat of formation + Delta-G solvation = -30.392065 kcal Electronic energy + Delta-G solvation = -13961.537704 eV Core-core repulsion = 11536.073785 eV Total energy + Delta-G solvation = -2425.463919 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39385 -37.65382 -34.90224 -32.95618 -31.65667 -29.51953 -25.98880 -25.81129 -24.29868 -21.27090 -20.56688 -18.74298 -17.57995 -16.50493 -15.82278 -15.28520 -14.85580 -14.54262 -14.39868 -14.21421 -13.38446 -13.05305 -12.63035 -12.31553 -12.13227 -11.29788 -11.19454 -11.04643 -10.99803 -10.67873 -10.62121 -10.33153 -9.78555 -9.41583 -9.16185 -8.88199 -8.53726 -8.34672 -6.09251 -4.11924 2.90710 3.28636 3.36091 3.41141 3.68383 4.22544 4.36871 4.42192 4.52475 4.71469 4.82337 5.27948 5.38934 5.52533 5.67355 5.71472 5.84708 5.94443 6.19770 6.33831 6.35763 6.73673 6.83105 6.94519 7.17271 7.52070 7.62088 7.89114 8.03371 8.28190 8.64400 8.94256 9.52958 11.02453 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.072795 B = 0.005565 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.551379 B = 5030.209046 C = 5247.839360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.715 5.715 12 C 0.526 3.474 13 O -0.549 6.549 14 C 0.073 3.927 15 N -0.816 5.816 16 C -0.158 4.158 17 C -0.141 4.141 18 C -0.113 4.113 19 H 0.261 0.739 20 H 0.021 0.979 21 H 0.023 0.977 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.395 0.605 25 H 0.346 0.654 26 H 0.348 0.652 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -15.885 -1.472 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.310 3.690 13 O -0.426 6.426 14 C -0.024 4.024 15 N -0.349 5.349 16 C -0.198 4.198 17 C -0.179 4.179 18 C -0.151 4.151 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.042 0.958 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.230 0.770 25 H 0.161 0.839 26 H 0.162 0.838 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.118 -15.577 -0.771 15.597 hybrid contribution -0.536 0.840 -0.986 1.402 sum -0.654 -14.737 -1.757 14.856 Atomic orbital electron populations 1.69966 1.06094 1.26755 1.50508 1.24997 0.94891 0.99416 0.94985 0.86456 0.80177 0.83327 0.77614 1.19580 1.20949 1.20905 1.21092 0.93283 0.90384 1.51182 0.92208 1.19330 0.94205 0.91151 0.97835 1.21747 0.96097 0.81631 1.00762 1.46340 1.10441 1.06600 1.73067 1.20050 0.87858 0.84794 0.76267 1.90659 1.13661 1.87370 1.50929 1.22217 0.91180 0.93512 0.95473 1.58635 1.02852 1.10282 1.63142 1.23691 1.03073 0.96701 0.96364 1.22887 1.01209 0.96279 0.97495 1.22951 1.00653 0.92734 0.98768 0.92907 0.96038 0.95824 0.92510 0.92611 0.77031 0.83937 0.83786 0.91064 0.89032 0.90866 0.90140 0.88163 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.62 5.61 -4.03 -0.02 2.60 16 11 N -0.71 -12.96 5.49 -60.29 -0.33 -13.29 16 12 C 0.53 9.33 7.14 -10.99 -0.08 9.25 16 13 O -0.55 -11.62 16.04 5.56 0.09 -11.53 16 14 C 0.07 0.95 1.69 -131.94 -0.22 0.72 16 15 N -0.82 -8.87 9.30 0.47 0.00 -8.87 16 16 C -0.16 -1.72 7.38 -25.78 -0.19 -1.91 16 17 C -0.14 -1.29 7.74 -25.78 -0.20 -1.49 16 18 C -0.11 -1.34 7.32 -25.92 -0.19 -1.53 16 19 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 20 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.40 6.26 6.68 -40.82 -0.27 5.98 16 25 H 0.35 3.53 7.31 -39.29 -0.29 3.24 16 26 H 0.35 2.90 8.14 -39.29 -0.32 2.58 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 31 H 0.10 1.35 7.38 -51.93 -0.38 0.97 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 269.88 15.07 4.07 4.07 Total: -1.00 -31.59 269.88 -6.50 -38.08 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.58 Total: 6.10 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.46 Total: -5.54 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.41 Total: -47.65 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.59 -6.50 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088051037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.693 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds