Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47397 * 270.00369 * 3 2 1 5 5 H 1.48504 * 109.46712 * 30.00427 * 3 2 1 6 6 H 1.48504 * 109.47036 * 149.99827 * 3 2 1 7 7 C 1.37883 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99587 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00522 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47175 * 59.99395 * 9 7 2 11 11 N 1.46906 * 109.46621 * 300.00119 * 9 7 2 12 12 C 1.50698 * 109.47404 * 179.97438 * 9 7 2 13 13 O 1.21278 * 119.99987 * 99.99812 * 12 9 7 14 14 N 1.34772 * 119.99730 * 279.99800 * 12 9 7 15 15 C 1.46504 * 119.99863 * 179.97438 * 14 12 9 16 16 C 1.55238 * 110.46889 * 269.81156 * 15 14 12 17 17 C 1.54894 * 102.58338 * 203.39139 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 0.97006 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.00902 * 110.99646 * 299.99567 * 11 9 7 22 22 H 1.00891 * 111.00359 * 63.95085 * 11 9 7 23 23 H 0.96996 * 120.00365 * 359.97438 * 14 12 9 24 24 H 1.09007 * 110.42957 * 32.46283 * 15 14 12 25 25 H 1.08996 * 110.89448 * 85.10703 * 16 15 14 26 26 H 1.08993 * 110.76342 * 321.62368 * 16 15 14 27 27 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 28 28 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 29 29 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 30 30 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 31 31 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 32 32 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8905 11 7 4.0016 -0.5007 -1.1988 12 6 4.0139 -2.6149 -0.0001 13 8 4.3883 -3.1256 -1.0344 14 7 4.0470 -3.3180 1.1493 15 6 4.5348 -4.6994 1.1491 16 6 3.3643 -5.6884 0.9009 17 6 3.8970 -7.0041 1.5209 18 6 4.6616 -6.5496 2.7813 19 6 5.0671 -5.0842 2.5449 20 1 -0.4851 0.8401 0.0004 21 1 3.6783 -0.9578 -2.0383 22 1 3.7321 0.4715 -1.1898 23 1 3.7479 -2.9094 1.9766 24 1 5.3119 -4.8284 0.3956 25 1 3.1791 -5.8116 -0.1661 26 1 2.4624 -5.3565 1.4150 27 1 4.5703 -7.5076 0.8272 28 1 3.0700 -7.6602 1.7923 29 1 4.0155 -6.6216 3.6562 30 1 5.5498 -7.1656 2.9217 31 1 4.6178 -4.4451 3.3050 32 1 6.1526 -4.9884 2.5708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117629563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -50.955122 kcal Electronic energy + Delta-G solvation = -14362.986430 eV Core-core repulsion = 11936.630830 eV Total energy + Delta-G solvation = -2426.355600 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.22958 -37.34213 -34.25819 -33.03385 -31.70664 -28.60800 -27.77910 -26.09103 -23.19917 -20.47062 -20.15172 -19.42991 -17.24845 -16.58587 -16.02317 -15.36590 -14.71327 -14.12556 -13.94302 -13.52718 -13.25205 -12.90859 -12.59191 -11.95465 -11.80418 -11.44278 -11.16947 -11.09395 -10.97423 -10.84944 -10.54208 -10.44701 -10.41235 -9.80536 -8.87114 -8.74879 -8.37135 -7.57593 -6.32277 -4.38286 3.10637 3.22521 3.23496 3.66390 3.89040 4.15817 4.68206 4.78666 4.94974 5.01167 5.47723 5.59286 5.62630 5.65704 5.73285 5.84494 5.91393 5.96198 6.08797 6.11379 6.34244 6.42287 6.51494 6.61983 7.18813 7.30034 7.92650 8.19630 8.34944 8.44040 8.72275 9.16387 9.25211 10.79639 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047296 B = 0.007873 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.878873 B = 3555.674597 C = 3720.462846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.164 3.836 10 H 0.058 0.942 11 N -0.838 5.838 12 C 0.544 3.456 13 O -0.555 6.555 14 N -0.730 5.730 15 C 0.142 3.858 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.131 4.131 20 H 0.269 0.731 21 H 0.343 0.657 22 H 0.318 0.682 23 H 0.400 0.600 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -8.173 6.202 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.051 3.949 10 H 0.076 0.924 11 N -0.373 5.373 12 C 0.333 3.667 13 O -0.432 6.432 14 N -0.382 5.382 15 C 0.036 3.964 16 C -0.175 4.175 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.169 4.169 20 H 0.079 0.921 21 H 0.157 0.843 22 H 0.135 0.865 23 H 0.234 0.766 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.430 -8.592 5.723 13.328 hybrid contribution -0.989 1.275 0.234 1.630 sum 7.441 -7.317 5.957 12.017 Atomic orbital electron populations 1.69879 1.06207 1.27454 1.48448 1.24990 0.94891 0.99083 0.93760 0.86963 0.80246 0.83546 0.78882 1.19889 1.21560 1.18332 1.21358 0.88703 0.95380 1.53644 0.90372 1.19354 0.94838 0.88549 0.92138 0.92383 1.59311 1.67027 1.05105 1.05875 1.20917 0.74709 0.88619 0.82457 1.90539 1.48400 1.72154 1.32124 1.46027 1.67475 1.13230 1.11459 1.21763 0.95987 0.81718 0.96919 1.22967 0.98642 0.94458 1.01419 1.22311 0.99528 0.97485 0.96860 1.22071 0.99883 0.95603 0.98293 1.22399 1.00999 0.96661 0.96866 0.92139 0.84346 0.86531 0.76613 0.89330 0.91196 0.90958 0.91700 0.91744 0.91784 0.91940 0.91178 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.96 55.43 0.77 -25.11 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 20.41 24.61 -169.99 -4.18 16.23 16 4 H -0.27 -6.19 7.01 56.52 0.40 -5.80 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.55 -15.02 9.29 -34.44 -0.32 -15.34 16 8 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 9 C 0.16 3.93 2.64 -70.02 -0.19 3.74 16 10 H 0.06 1.34 7.20 -51.93 -0.37 0.97 16 11 N -0.84 -19.74 8.90 -6.65 -0.06 -19.80 16 12 C 0.54 12.33 7.01 -10.99 -0.08 12.25 16 13 O -0.56 -13.90 15.90 5.56 0.09 -13.81 16 14 N -0.73 -13.25 5.16 -52.02 -0.27 -13.52 16 15 C 0.14 2.19 3.23 -66.08 -0.21 1.98 16 16 C -0.14 -2.02 6.61 -24.55 -0.16 -2.18 16 17 C -0.12 -1.41 6.82 -25.07 -0.17 -1.58 16 18 C -0.12 -1.24 6.80 -25.62 -0.17 -1.41 16 19 C -0.13 -1.54 6.53 -25.62 -0.17 -1.71 16 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.34 8.21 8.58 -39.29 -0.34 7.88 16 22 H 0.32 7.33 4.29 -39.30 -0.17 7.16 16 23 H 0.40 6.54 8.37 -40.82 -0.34 6.20 16 24 H 0.09 1.51 7.55 -51.93 -0.39 1.11 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 260.60 15.07 3.93 3.93 Total: -1.00 -30.75 260.60 -5.85 -36.61 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -4.56 Total: 17.69 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.57 Total: -2.21 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.45 Total: -58.43 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.18 Total: 16.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.75 -5.85 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117629563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.349 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds