Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47397 * 270.00369 * 3 2 1 5 5 H 1.48504 * 109.46712 * 30.00427 * 3 2 1 6 6 H 1.48504 * 109.47036 * 149.99827 * 3 2 1 7 7 C 1.37883 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99587 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00522 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47175 * 59.99395 * 9 7 2 11 11 N 1.46906 * 109.46621 * 300.00119 * 9 7 2 12 12 C 1.50698 * 109.47404 * 179.97438 * 9 7 2 13 13 O 1.21278 * 119.99987 * 99.99812 * 12 9 7 14 14 N 1.34772 * 119.99730 * 279.99800 * 12 9 7 15 15 C 1.46504 * 119.99863 * 179.97438 * 14 12 9 16 16 C 1.55238 * 110.46889 * 269.81156 * 15 14 12 17 17 C 1.54894 * 102.58338 * 203.39139 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 0.97006 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.00902 * 110.99646 * 299.99567 * 11 9 7 22 22 H 1.00891 * 111.00359 * 63.95085 * 11 9 7 23 23 H 0.96996 * 120.00365 * 359.97438 * 14 12 9 24 24 H 1.09007 * 110.42957 * 32.46283 * 15 14 12 25 25 H 1.08996 * 110.89448 * 85.10703 * 16 15 14 26 26 H 1.08993 * 110.76342 * 321.62368 * 16 15 14 27 27 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 28 28 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 29 29 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 30 30 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 31 31 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 32 32 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8905 11 7 4.0016 -0.5007 -1.1988 12 6 4.0139 -2.6149 -0.0001 13 8 4.3883 -3.1256 -1.0344 14 7 4.0470 -3.3180 1.1493 15 6 4.5348 -4.6994 1.1491 16 6 3.3643 -5.6884 0.9009 17 6 3.8970 -7.0041 1.5209 18 6 4.6616 -6.5496 2.7813 19 6 5.0671 -5.0842 2.5449 20 1 -0.4851 0.8401 0.0004 21 1 3.6783 -0.9578 -2.0383 22 1 3.7321 0.4715 -1.1898 23 1 3.7479 -2.9094 1.9766 24 1 5.3119 -4.8284 0.3956 25 1 3.1791 -5.8116 -0.1661 26 1 2.4624 -5.3565 1.4150 27 1 4.5703 -7.5076 0.8272 28 1 3.0700 -7.6602 1.7923 29 1 4.0155 -6.6216 3.6562 30 1 5.5498 -7.1656 2.9217 31 1 4.6178 -4.4451 3.3050 32 1 6.1526 -4.9884 2.5708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117629563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -75.329584 kcal Electronic energy + Delta-G solvation = -14364.043386 eV Core-core repulsion = 11936.630830 eV Total energy + Delta-G solvation = -2427.412556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82751 -38.66931 -36.23456 -34.53072 -33.79118 -29.63659 -29.24167 -27.88318 -25.06204 -21.64808 -21.39191 -20.95711 -19.29569 -18.42514 -17.39474 -16.78756 -16.32808 -15.85584 -15.45728 -15.34296 -14.57237 -14.31701 -14.27881 -13.68163 -13.36331 -13.07655 -12.84045 -12.45700 -12.28695 -12.07625 -11.98625 -11.78508 -11.73270 -11.29410 -10.97150 -10.60257 -9.90934 -9.52667 -8.45522 -6.58111 1.27220 1.32736 1.42736 1.86138 2.18476 2.37123 2.89135 3.62460 3.75296 3.96901 4.03987 4.20409 4.50693 4.52386 4.55159 4.63449 4.69841 4.79880 4.91819 5.07890 5.20300 5.22611 5.24625 5.28988 5.47939 5.73413 5.89394 6.22291 6.42982 6.56613 6.71944 7.08485 7.44844 8.69949 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047296 B = 0.007873 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.878873 B = 3555.674597 C = 3720.462846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.940 3.060 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.556 4.556 8 H 0.033 0.967 9 C 0.165 3.835 10 H 0.075 0.925 11 N -0.832 5.832 12 C 0.538 3.462 13 O -0.586 6.586 14 N -0.716 5.716 15 C 0.133 3.867 16 C -0.140 4.140 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.123 4.123 20 H 0.273 0.727 21 H 0.340 0.660 22 H 0.323 0.677 23 H 0.409 0.591 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -8.018 7.632 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.595 4.595 8 H 0.051 0.949 9 C 0.052 3.948 10 H 0.092 0.908 11 N -0.367 5.367 12 C 0.326 3.674 13 O -0.466 6.466 14 N -0.367 5.367 15 C 0.028 3.972 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.161 4.161 20 H 0.082 0.918 21 H 0.152 0.848 22 H 0.139 0.861 23 H 0.245 0.755 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.103 -8.463 7.192 15.014 hybrid contribution -1.575 1.142 -0.218 1.958 sum 8.528 -7.322 6.974 13.228 Atomic orbital electron populations 1.70016 1.08169 1.28788 1.49732 1.25851 0.95626 1.03015 0.92987 0.85909 0.79516 0.78365 0.79773 1.18528 1.21166 1.16245 1.21420 0.90517 0.93841 1.53770 0.94874 1.19324 0.92602 0.89973 0.92864 0.90772 1.59317 1.66531 1.05301 1.05502 1.20783 0.74849 0.88558 0.83231 1.90518 1.50104 1.72636 1.33365 1.45954 1.66043 1.14177 1.10515 1.22022 0.95812 0.80051 0.99297 1.22940 0.98238 0.96750 0.99932 1.22293 1.00197 0.95545 0.97421 1.22077 1.00821 0.94511 0.97821 1.22383 1.01759 0.97907 0.94056 0.91790 0.84758 0.86072 0.75493 0.90974 0.93940 0.92045 0.91037 0.90418 0.90511 0.89775 0.90282 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 2 C 0.03 1.44 5.47 84.66 0.46 1.91 16 3 Si 0.94 41.07 24.61 68.60 1.69 42.76 16 4 H -0.26 -10.81 7.01 99.48 0.70 -10.12 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.24 -9.64 6.54 99.48 0.65 -8.98 16 7 C -0.56 -30.79 9.29 25.60 0.24 -30.56 16 8 H 0.03 2.08 7.98 -2.91 -0.02 2.06 16 9 C 0.17 7.83 2.64 43.42 0.11 7.94 16 10 H 0.07 3.28 7.20 -2.39 -0.02 3.26 16 11 N -0.83 -38.17 8.90 -174.95 -1.56 -39.73 16 12 C 0.54 24.48 7.01 87.66 0.61 25.10 16 13 O -0.59 -29.82 15.90 -3.02 -0.05 -29.87 16 14 N -0.72 -25.78 5.16 -436.87 -2.25 -28.03 16 15 C 0.13 4.03 3.23 46.19 0.15 4.18 16 16 C -0.14 -4.17 6.61 32.01 0.21 -3.96 16 17 C -0.12 -2.43 6.82 31.67 0.22 -2.22 16 18 C -0.11 -1.97 6.80 31.32 0.21 -1.76 16 19 C -0.12 -2.57 6.53 31.32 0.20 -2.37 16 20 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 21 H 0.34 16.16 8.58 -89.69 -0.77 15.39 16 22 H 0.32 14.09 4.29 -89.70 -0.39 13.71 16 23 H 0.41 13.03 8.37 -92.71 -0.78 12.26 16 24 H 0.07 2.45 7.55 -2.38 -0.02 2.43 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.53 7.73 -2.39 -0.02 1.52 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -67.13 260.60 -0.31 -67.43 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.86 Total: 44.20 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 2.42 Total: -1.73 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -3.51 Total: -122.78 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.69 Total: 42.76 kcal Total: -67.13 -0.31 -67.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117629563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds