Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46999 * 269.99964 * 3 2 1 5 5 H 1.48495 * 109.46922 * 29.99962 * 3 2 1 6 6 H 1.48499 * 109.46982 * 150.00093 * 3 2 1 7 7 C 1.37874 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00329 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99969 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00023 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00254 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47176 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47352 * 54.99707 * 14 13 11 16 16 N 1.46905 * 109.46947 * 294.99937 * 14 13 11 17 17 C 1.53001 * 109.47190 * 175.00119 * 14 13 11 18 18 C 1.53005 * 117.49698 * 248.74299 * 17 14 13 19 19 C 1.53001 * 117.49867 * 180.08387 * 17 14 13 20 20 H 0.96996 * 120.00236 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46663 * 60.00326 * 9 7 2 22 22 H 1.09001 * 109.47035 * 300.00348 * 9 7 2 23 23 H 0.97005 * 119.99746 * 0.02562 * 10 9 7 24 24 H 1.08997 * 109.47644 * 60.00424 * 13 11 10 25 25 H 1.09001 * 109.47215 * 300.00275 * 13 11 10 26 26 H 1.00901 * 110.99869 * 176.04901 * 16 14 13 27 27 H 1.00896 * 110.99543 * 300.00023 * 16 14 13 28 28 H 1.08999 * 115.55273 * 34.41507 * 17 14 13 29 29 H 1.08995 * 117.49745 * 0.02562 * 18 17 14 30 30 H 1.08996 * 117.49514 * 145.02210 * 18 17 14 31 31 H 1.08997 * 117.50296 * 214.97733 * 19 17 14 32 32 H 1.08999 * 117.49872 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 6 5.3250 -2.8215 0.0005 12 8 6.1131 -1.8996 -0.0008 13 6 5.8273 -4.2422 0.0014 14 6 7.3573 -4.2422 0.0009 15 1 7.7210 -3.6522 0.8421 16 7 7.8466 -3.6577 -1.2549 17 6 7.8674 -5.6791 0.1274 18 6 8.5672 -6.0681 1.4313 19 6 9.3824 -5.8918 0.1477 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6807 -0.8905 23 1 3.3696 -3.3125 0.0020 24 1 5.4635 -4.7569 -0.8879 25 1 5.4646 -4.7554 0.8920 26 1 8.8531 -3.5872 -1.2530 27 1 7.5228 -4.1872 -2.0504 28 1 7.2591 -6.4389 -0.3634 29 1 8.6638 -5.3005 2.1990 30 1 8.4196 -7.0839 1.7980 31 1 9.7709 -6.7915 -0.3294 32 1 10.0158 -5.0080 0.0705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129756117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -23.912563 kcal Electronic energy + Delta-G solvation = -13788.266026 eV Core-core repulsion = 11363.083079 eV Total energy + Delta-G solvation = -2425.182947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19051 -37.81402 -34.24696 -33.53350 -32.26440 -29.70931 -27.53975 -24.13560 -22.53710 -21.79481 -20.27709 -19.60576 -17.15669 -16.45012 -15.95229 -15.30504 -15.02969 -14.66698 -14.36920 -13.78972 -13.57107 -12.71686 -12.32974 -12.30624 -12.02438 -11.80378 -11.46094 -11.17349 -10.94029 -10.68813 -10.50323 -10.40788 -9.91058 -9.42452 -8.96298 -8.71325 -8.45689 -7.97272 -6.16411 -4.17851 3.31205 3.37708 3.46739 3.49501 3.53896 4.06306 4.38779 4.55957 4.62316 4.70309 4.90563 5.06730 5.19195 5.36811 5.37763 5.40603 5.64185 5.75764 5.81554 5.87619 5.96119 6.18130 6.92457 7.17574 7.28510 7.37300 7.51143 7.57756 8.23893 8.65551 8.82850 9.15360 9.45293 10.95710 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.068664 B = 0.005668 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.683486 B = 4939.046954 C = 5145.567351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.222 3.778 10 N -0.714 5.714 11 C 0.502 3.498 12 O -0.537 6.537 13 C -0.132 4.132 14 C 0.140 3.860 15 H 0.087 0.913 16 N -0.822 5.822 17 C -0.192 4.192 18 C -0.174 4.174 19 C -0.181 4.181 20 H 0.267 0.733 21 H 0.022 0.978 22 H 0.019 0.981 23 H 0.393 0.607 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.336 0.664 27 H 0.333 0.667 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 -12.323 0.203 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.099 3.901 10 N -0.364 5.364 11 C 0.286 3.714 12 O -0.414 6.414 13 C -0.173 4.173 14 C 0.028 3.972 15 H 0.105 0.895 16 N -0.349 5.349 17 C -0.212 4.212 18 C -0.212 4.212 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.226 0.774 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.741 -10.831 0.406 18.297 hybrid contribution 0.398 -0.555 -0.168 0.703 sum 15.139 -11.386 0.239 18.944 Atomic orbital electron populations 1.69888 1.06224 1.27345 1.49804 1.24804 0.94778 0.99188 0.93925 0.86802 0.80567 0.83195 0.79038 1.19875 1.20996 1.18497 1.21134 0.88728 0.95132 1.52929 0.90360 1.19420 0.94979 0.79106 0.96558 1.46189 1.05906 1.10642 1.73644 1.20317 0.82841 0.90786 0.77407 1.90660 1.55276 1.46044 1.49435 1.21689 0.95785 0.96093 1.03730 1.20744 0.93310 0.89005 0.94159 0.89526 1.58818 1.15576 1.57368 1.03123 1.23425 0.95045 1.00402 1.02358 1.22968 1.04289 1.02611 0.91310 1.22903 0.93622 1.03128 1.02166 0.92347 0.95991 0.96327 0.77382 0.89574 0.89071 0.85088 0.85463 0.87892 0.88553 0.88948 0.88983 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.54 -15.21 9.83 -34.44 -0.34 -15.55 16 8 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 9 C 0.22 5.64 4.50 -5.19 -0.02 5.62 16 10 N -0.71 -14.92 5.55 -61.47 -0.34 -15.26 16 11 C 0.50 9.75 7.69 -10.99 -0.08 9.67 16 12 O -0.54 -12.52 15.35 5.56 0.09 -12.44 16 13 C -0.13 -1.78 5.33 -27.88 -0.15 -1.93 16 14 C 0.14 1.75 2.52 -67.71 -0.17 1.58 16 15 H 0.09 1.25 7.71 -51.93 -0.40 0.85 16 16 N -0.82 -10.53 8.35 -4.66 -0.04 -10.57 16 17 C -0.19 -1.82 5.33 -90.62 -0.48 -2.30 16 18 C -0.17 -1.52 10.18 -26.69 -0.27 -1.80 16 19 C -0.18 -1.51 9.87 -26.69 -0.26 -1.77 16 20 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 22 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 23 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.34 3.71 8.30 -39.29 -0.33 3.39 16 27 H 0.33 3.74 9.00 -39.29 -0.35 3.39 16 28 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.78 7.74 -51.93 -0.40 0.38 16 LS Contribution 272.87 15.07 4.11 4.11 Total: -1.00 -32.85 272.87 -6.66 -39.50 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.70 Total: 7.95 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.88 Total: -4.38 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.39 Total: -52.06 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.85 -6.66 -39.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129756117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.590 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds