Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46999 * 269.99964 * 3 2 1 5 5 H 1.48495 * 109.46922 * 29.99962 * 3 2 1 6 6 H 1.48499 * 109.46982 * 150.00093 * 3 2 1 7 7 C 1.37874 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00329 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99969 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00023 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00254 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47176 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47352 * 54.99707 * 14 13 11 16 16 N 1.46905 * 109.46947 * 294.99937 * 14 13 11 17 17 C 1.53001 * 109.47190 * 175.00119 * 14 13 11 18 18 C 1.53005 * 117.49698 * 248.74299 * 17 14 13 19 19 C 1.53001 * 117.49867 * 180.08387 * 17 14 13 20 20 H 0.96996 * 120.00236 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46663 * 60.00326 * 9 7 2 22 22 H 1.09001 * 109.47035 * 300.00348 * 9 7 2 23 23 H 0.97005 * 119.99746 * 0.02562 * 10 9 7 24 24 H 1.08997 * 109.47644 * 60.00424 * 13 11 10 25 25 H 1.09001 * 109.47215 * 300.00275 * 13 11 10 26 26 H 1.00901 * 110.99869 * 176.04901 * 16 14 13 27 27 H 1.00896 * 110.99543 * 300.00023 * 16 14 13 28 28 H 1.08999 * 115.55273 * 34.41507 * 17 14 13 29 29 H 1.08995 * 117.49745 * 0.02562 * 18 17 14 30 30 H 1.08996 * 117.49514 * 145.02210 * 18 17 14 31 31 H 1.08997 * 117.50296 * 214.97733 * 19 17 14 32 32 H 1.08999 * 117.49872 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 6 5.3250 -2.8215 0.0005 12 8 6.1131 -1.8996 -0.0008 13 6 5.8273 -4.2422 0.0014 14 6 7.3573 -4.2422 0.0009 15 1 7.7210 -3.6522 0.8421 16 7 7.8466 -3.6577 -1.2549 17 6 7.8674 -5.6791 0.1274 18 6 8.5672 -6.0681 1.4313 19 6 9.3824 -5.8918 0.1477 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6807 -0.8905 23 1 3.3696 -3.3125 0.0020 24 1 5.4635 -4.7569 -0.8879 25 1 5.4646 -4.7554 0.8920 26 1 8.8531 -3.5872 -1.2530 27 1 7.5228 -4.1872 -2.0504 28 1 7.2591 -6.4389 -0.3634 29 1 8.6638 -5.3005 2.1990 30 1 8.4196 -7.0839 1.7980 31 1 9.7709 -6.7915 -0.3294 32 1 10.0158 -5.0080 0.0705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129756117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -49.517041 kcal Electronic energy + Delta-G solvation = -13789.376319 eV Core-core repulsion = 11363.083079 eV Total energy + Delta-G solvation = -2426.293240 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59308 -38.83770 -36.07619 -34.56703 -34.34546 -31.09721 -29.31395 -25.37609 -23.62332 -23.17567 -21.38163 -21.02452 -19.07507 -17.64936 -17.42646 -16.81232 -16.23594 -16.12939 -15.71928 -15.20786 -14.89405 -14.58587 -14.05672 -13.96473 -13.17433 -12.81542 -12.77640 -12.59092 -12.43865 -12.14556 -11.92458 -11.63941 -11.23435 -11.16220 -10.90792 -10.57399 -9.79790 -9.38581 -8.39481 -6.45913 1.32838 1.34676 1.48108 1.94876 2.28869 2.57132 2.88505 2.96032 3.66743 3.72767 3.94424 4.09913 4.20297 4.27646 4.51497 4.56510 4.77136 4.82058 4.88124 5.02595 5.04329 5.08696 5.25573 5.29167 5.30743 5.63733 6.12387 6.39197 6.55461 6.72149 6.98668 7.18441 7.59610 8.75401 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.068664 B = 0.005668 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.683486 B = 4939.046954 C = 5145.567351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.234 3.766 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.578 6.578 13 C -0.121 4.121 14 C 0.144 3.856 15 H 0.061 0.939 16 N -0.842 5.842 17 C -0.190 4.190 18 C -0.176 4.176 19 C -0.174 4.174 20 H 0.272 0.728 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.406 0.594 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.344 0.656 27 H 0.342 0.658 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -13.425 0.036 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.110 3.890 10 N -0.366 5.366 11 C 0.286 3.714 12 O -0.457 6.457 13 C -0.161 4.161 14 C 0.031 3.969 15 H 0.079 0.921 16 N -0.371 5.371 17 C -0.210 4.210 18 C -0.214 4.214 19 C -0.211 4.211 20 H 0.081 0.919 21 H 0.025 0.975 22 H 0.024 0.976 23 H 0.241 0.759 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.158 0.842 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.903 -11.974 0.238 19.909 hybrid contribution 0.036 -0.260 -0.112 0.285 sum 15.939 -12.234 0.126 20.094 Atomic orbital electron populations 1.69982 1.07644 1.28581 1.50890 1.25598 0.95534 1.02641 0.93604 0.85848 0.79154 0.79393 0.79420 1.19038 1.19663 1.18761 1.21329 0.90074 0.94553 1.52408 0.92287 1.19005 0.93186 0.81670 0.95181 1.46093 1.07138 1.09191 1.74174 1.21345 0.81601 0.92983 0.75455 1.90640 1.56048 1.48068 1.50983 1.21726 0.96466 0.91825 1.06084 1.20604 0.92451 0.90628 0.93186 0.92094 1.58795 1.16417 1.58229 1.03686 1.23207 0.95990 0.98500 1.03321 1.23042 1.04111 1.03141 0.91098 1.22970 0.92788 1.03625 1.01718 0.91859 0.97451 0.97597 0.75905 0.87045 0.86583 0.84242 0.84477 0.86463 0.89379 0.87523 0.87464 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 45.28 27.47 68.60 1.88 47.16 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 7 C -0.55 -30.90 9.83 25.60 0.25 -30.65 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.91 4.50 85.63 0.39 12.29 16 10 N -0.72 -29.41 5.55 -466.80 -2.59 -32.00 16 11 C 0.50 18.88 7.69 87.66 0.67 19.55 16 12 O -0.58 -26.86 15.35 -3.03 -0.05 -26.90 16 13 C -0.12 -2.98 5.33 29.85 0.16 -2.82 16 14 C 0.14 3.33 2.52 44.91 0.11 3.44 16 15 H 0.06 1.73 7.71 -2.39 -0.02 1.71 16 16 N -0.84 -20.42 8.35 -168.67 -1.41 -21.83 16 17 C -0.19 -3.07 5.33 -10.79 -0.06 -3.13 16 18 C -0.18 -2.66 10.18 30.62 0.31 -2.35 16 19 C -0.17 -2.46 9.87 30.62 0.30 -2.16 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 22 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 23 H 0.41 14.53 8.32 -92.70 -0.77 13.76 16 24 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.34 7.22 8.30 -89.69 -0.74 6.47 16 27 H 0.34 7.03 9.00 -89.70 -0.81 6.22 16 28 H 0.12 1.62 8.11 -2.39 -0.02 1.60 16 29 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.34 7.74 -2.39 -0.02 1.33 16 Total: -1.00 -70.33 272.87 -0.50 -70.82 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -1.24 Total: 22.76 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 2.60 Total: -3.83 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.70 Total: -110.02 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -70.33 -0.50 -70.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129756117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.308 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds