Wall clock time and date at job start Mon Mar 30 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00009 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.46995 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99642 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99773 * 180.02562 * 14 13 12 17 17 C 1.53001 * 117.49924 * 248.61926 * 16 14 13 18 18 C 1.52997 * 60.00080 * 252.51036 * 17 16 14 19 19 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 26 26 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 27 27 H 0.96998 * 120.00192 * 359.97438 * 13 12 11 28 28 H 1.09006 * 115.55393 * 34.32883 * 16 14 13 29 29 H 1.08997 * 117.49878 * 0.02562 * 17 16 14 30 30 H 1.09002 * 117.50200 * 145.02129 * 17 16 14 31 31 H 1.09000 * 117.50332 * 252.50780 * 18 17 16 32 32 H 1.09000 * 117.51934 * 107.48216 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0431 0.0019 13 7 1.8318 -7.3308 0.0019 14 6 2.5366 -8.4796 0.0030 15 8 3.7489 -8.4473 0.0035 16 6 1.8181 -9.8043 0.0024 17 6 1.9148 -10.6609 1.2665 18 6 2.6743 -11.0723 0.0037 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8399 -3.5483 0.7835 23 1 0.8813 -4.9815 -0.8895 24 1 0.8795 -4.9813 0.8905 25 1 3.1557 -5.9685 -0.8877 26 1 3.1545 -5.9686 0.8923 27 1 0.8621 -7.3567 0.0019 28 1 0.8807 -9.8306 -0.5532 29 1 2.4977 -10.2661 2.0986 30 1 1.0409 -11.2509 1.5428 31 1 2.3002 -11.9329 -0.5509 32 1 3.7573 -10.9484 0.0045 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135834461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:46 Heat of formation + Delta-G solvation = -21.788699 kcal Electronic energy + Delta-G solvation = -13271.594296 eV Core-core repulsion = 10846.503447 eV Total energy + Delta-G solvation = -2425.090849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.93387 -36.72384 -35.80023 -34.17839 -32.38427 -29.06225 -26.11615 -24.05901 -22.67063 -21.79510 -21.45497 -20.02492 -17.58377 -16.42808 -15.96440 -15.63250 -15.20917 -14.64713 -14.37058 -14.08356 -13.37469 -12.84423 -12.65199 -12.43283 -11.80478 -11.78487 -11.20221 -11.04054 -10.86932 -10.76434 -10.70915 -10.63523 -10.04857 -9.82823 -9.21829 -9.01389 -8.52339 -7.41753 -6.07081 -4.09156 2.45008 3.10201 3.29837 3.37138 3.42843 3.65968 4.40875 4.50619 4.59984 4.65149 4.94235 5.15052 5.29198 5.33330 5.34035 5.50767 5.60186 5.69857 5.84292 5.88619 6.21763 6.26625 6.50380 7.15605 7.33845 7.50078 7.73539 8.06177 8.22010 8.29235 8.52684 9.00059 9.56138 11.04153 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.100470 B = 0.004103 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.623158 B = 6821.845631 C = 7001.319540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.049 3.951 12 C 0.120 3.880 13 N -0.723 5.723 14 C 0.539 3.461 15 O -0.543 6.543 16 C -0.194 4.194 17 C -0.154 4.154 18 C -0.149 4.149 19 H 0.261 0.739 20 H 0.029 0.971 21 H -0.012 1.012 22 H 0.332 0.668 23 H 0.070 0.930 24 H 0.024 0.976 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.401 0.599 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -18.627 1.464 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.318 5.318 11 C -0.081 4.081 12 C -0.004 4.004 13 N -0.374 5.374 14 C 0.325 3.675 15 O -0.421 6.421 16 C -0.216 4.216 17 C -0.191 4.191 18 C -0.186 4.186 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.006 0.994 22 H 0.148 0.852 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.235 0.765 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.027 -18.427 0.770 18.472 hybrid contribution -0.634 0.998 0.845 1.453 sum 0.393 -17.429 1.615 17.508 Atomic orbital electron populations 1.69965 1.06116 1.26778 1.50912 1.24996 0.94903 0.99469 0.95244 0.86400 0.80103 0.83159 0.77519 1.19575 1.20949 1.21069 1.21224 0.93657 0.90130 1.50382 0.91763 1.19581 0.90515 0.87202 0.95915 1.60582 1.21312 1.00732 1.49165 1.22022 0.95216 0.90478 1.00393 1.21406 0.95354 0.80863 1.02758 1.45911 1.10457 1.05951 1.75033 1.19631 0.87313 0.84673 0.75848 1.90698 1.13939 1.87585 1.49863 1.22216 1.02819 0.90900 1.05636 1.22934 1.03187 1.01529 0.91490 1.22943 0.99817 0.95580 1.00288 0.92913 0.95273 0.99435 0.85178 0.91177 0.95770 0.90570 0.91783 0.76538 0.85845 0.88252 0.87823 0.87985 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.28 55.43 0.74 -25.98 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.61 9.32 -34.44 -0.32 -14.94 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.06 5.44 -4.97 -0.03 5.03 16 10 N -0.69 -14.59 6.49 -115.06 -0.75 -15.34 16 11 C 0.05 0.83 5.80 -3.82 -0.02 0.81 16 12 C 0.12 1.80 5.93 -4.04 -0.02 1.78 16 13 N -0.72 -9.01 5.56 -60.29 -0.33 -9.35 16 14 C 0.54 7.24 7.61 -10.98 -0.08 7.15 16 15 O -0.54 -9.49 16.26 5.56 0.09 -9.40 16 16 C -0.19 -1.83 6.19 -91.77 -0.57 -2.40 16 17 C -0.15 -1.23 10.23 -26.73 -0.27 -1.51 16 18 C -0.15 -1.29 10.04 -26.73 -0.27 -1.56 16 19 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 20 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 21 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 22 H 0.33 6.73 8.72 -39.29 -0.34 6.39 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.40 3.89 8.47 -40.82 -0.35 3.55 16 28 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.11 7.67 -51.93 -0.40 0.72 16 LS Contribution 280.88 15.07 4.23 4.23 Total: -1.00 -32.35 280.88 -7.59 -39.94 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.86 Total: 3.38 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.69 Total: -4.14 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.35 Total: -50.66 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.35 -7.59 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135834461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.151 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds