Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00399 * 2 1 4 4 H 1.48494 * 109.47416 * 239.99758 * 3 2 1 5 5 H 1.48503 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47371 * 119.99633 * 3 2 1 7 7 C 1.38821 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99267 * 192.07548 * 7 2 1 9 9 N 1.36934 * 120.00025 * 12.07531 * 7 2 1 10 10 C 1.46923 * 120.63104 * 31.35415 * 9 7 2 11 11 C 1.53188 * 108.77737 * 126.39084 * 10 9 7 12 12 C 1.53035 * 109.31408 * 54.63191 * 11 10 9 13 13 C 1.53044 * 109.53897 * 298.64080 * 12 11 10 14 14 C 1.46921 * 120.63028 * 211.35121 * 9 7 2 15 15 H 1.09001 * 109.70309 * 113.75022 * 14 9 7 16 16 C 1.53006 * 109.58889 * 353.39893 * 14 9 7 17 17 C 1.50705 * 109.46787 * 65.70574 * 16 14 9 18 18 N 1.34777 * 119.99506 * 180.02562 * 17 16 14 19 19 O 1.21280 * 120.00373 * 0.02562 * 17 16 14 20 20 H 0.97006 * 119.99538 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.58624 * 6.60468 * 10 9 7 22 22 H 1.09003 * 109.58654 * 246.17915 * 10 9 7 23 23 H 1.09005 * 109.49582 * 294.68501 * 11 10 9 24 24 H 1.08995 * 109.52852 * 174.60507 * 11 10 9 25 25 H 1.08997 * 109.46640 * 178.61617 * 12 11 10 26 26 H 1.09004 * 109.45855 * 58.65518 * 12 11 10 27 27 H 1.09000 * 109.49153 * 301.40822 * 13 12 11 28 28 H 1.09002 * 109.49404 * 181.31493 * 13 12 11 29 29 H 1.08997 * 109.46619 * 305.71245 * 16 14 9 30 30 H 1.08998 * 109.47367 * 185.70554 * 16 14 9 31 31 H 0.97001 * 119.99903 * 0.02562 * 18 17 16 32 32 H 0.96998 * 120.00077 * 179.73061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0723 -1.2125 0.1962 9 7 1.3482 -2.3751 -0.2470 10 6 0.1809 -2.4020 -1.1388 11 6 0.4113 -3.4614 -2.2210 12 6 0.7256 -4.8037 -1.5564 13 6 2.0042 -4.6762 -0.7250 14 6 1.7917 -3.6305 0.3740 15 1 1.0327 -3.9833 1.0723 16 6 3.1066 -3.3969 1.1208 17 6 2.8676 -2.4614 2.2780 18 7 3.8902 -2.1098 3.0824 19 8 1.7552 -2.0250 2.4853 20 1 -0.4850 0.8401 -0.0004 21 1 0.0547 -1.4248 -1.6051 22 1 -0.7114 -2.6534 -0.5654 23 1 1.2494 -3.1621 -2.8505 24 1 -0.4859 -3.5593 -2.8320 25 1 0.8659 -5.5649 -2.3238 26 1 -0.1022 -5.0904 -0.9078 27 1 2.8272 -4.3655 -1.3687 28 1 2.2402 -5.6386 -0.2709 29 1 3.8365 -2.9560 0.4419 30 1 3.4860 -4.3478 1.4947 31 1 4.7800 -2.4586 2.9164 32 1 3.7373 -1.5046 3.8249 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137442181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = -23.105869 kcal Electronic energy + Delta-G solvation = -15221.096871 eV Core-core repulsion = 12795.948905 eV Total energy + Delta-G solvation = -2425.147966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86185 -36.95928 -32.91101 -32.69461 -31.78456 -29.67667 -26.87996 -24.96361 -21.91990 -21.27441 -19.37516 -18.92254 -16.67456 -16.17513 -15.59030 -15.36527 -14.02402 -13.85093 -13.28306 -13.14544 -13.06237 -12.53783 -12.24729 -11.65239 -11.30708 -10.91126 -10.77853 -10.60372 -10.38077 -10.12744 -9.95385 -9.82288 -9.36202 -9.23739 -8.83389 -8.78563 -8.19542 -6.33790 -5.54857 -2.98219 3.46530 3.50894 3.52007 3.76219 4.35052 4.64404 5.43248 5.54935 5.65584 5.72486 5.80125 5.88218 6.04817 6.18011 6.32003 6.38763 6.49839 6.59512 6.69992 6.87029 6.89700 7.02948 7.23194 7.55133 7.57311 7.85897 7.93167 8.14580 8.68162 9.31217 9.43442 10.06408 10.65727 11.54726 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.017017 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.576979 B = 1645.032380 C = 2488.110304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.012 3.988 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.576 5.576 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.184 3.816 15 H 0.030 0.970 16 C -0.128 4.128 17 C 0.514 3.486 18 N -0.878 5.878 19 O -0.486 6.486 20 H 0.249 0.751 21 H 0.085 0.915 22 H 0.015 0.985 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.389 0.611 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 -7.827 0.621 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.073 0.927 9 N -0.299 5.299 10 C 0.050 3.950 11 C -0.183 4.183 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.076 3.924 15 H 0.048 0.952 16 C -0.169 4.169 17 C 0.298 3.702 18 N -0.444 5.444 19 O -0.356 6.356 20 H 0.059 0.941 21 H 0.103 0.897 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.215 0.785 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.069 -7.484 0.597 9.654 hybrid contribution 0.935 1.062 0.286 1.444 sum 7.004 -6.422 0.883 9.544 Atomic orbital electron populations 1.69970 1.05105 1.24791 1.54356 1.25003 0.95136 0.97733 1.00777 0.86544 0.78972 0.84541 0.77662 1.21366 1.21781 1.21283 1.18733 0.90273 0.83955 1.43377 0.92681 1.43886 1.33609 1.02468 1.49969 1.20715 0.88343 0.97025 0.88913 1.22207 0.99655 0.96782 0.99630 1.21364 0.97656 0.97323 0.98210 1.22049 0.97813 0.98247 0.98809 1.20208 0.92277 0.88513 0.91374 0.95211 1.21712 1.01125 0.97830 0.96218 1.20444 0.84755 0.81991 0.83027 1.43994 1.11878 1.53815 1.34679 1.90850 1.23080 1.51892 1.69728 0.94053 0.89716 0.96699 0.92963 0.93692 0.94011 0.92957 0.92454 0.93486 0.89210 0.90894 0.78501 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 11.13 55.49 0.62 -26.97 16 2 C 0.01 0.35 5.01 -17.43 -0.09 0.27 16 3 Si 0.89 22.79 29.57 -169.99 -5.03 17.76 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.23 -6.46 6.34 -15.06 -0.10 -6.56 16 8 H 0.06 1.48 5.69 -52.49 -0.30 1.19 16 9 N -0.58 -14.78 2.81 -164.78 -0.46 -15.24 16 10 C 0.18 4.42 5.26 -3.71 -0.02 4.40 16 11 C -0.14 -2.88 6.08 -26.62 -0.16 -3.05 16 12 C -0.11 -1.92 5.88 -26.69 -0.16 -2.08 16 13 C -0.13 -2.30 5.37 -26.61 -0.14 -2.45 16 14 C 0.18 3.95 2.47 -67.60 -0.17 3.78 16 15 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 16 C -0.13 -2.35 4.72 -27.88 -0.13 -2.48 16 17 C 0.51 10.58 6.40 -10.98 -0.07 10.51 16 18 N -0.88 -13.44 8.87 31.22 0.28 -13.17 16 19 O -0.49 -12.91 15.01 5.56 0.08 -12.82 16 20 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.08 2.37 6.15 -51.92 -0.32 2.05 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.62 7.07 -51.93 -0.37 1.25 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.39 4.39 8.83 -40.82 -0.36 4.03 16 32 H 0.39 5.72 8.93 -40.82 -0.36 5.35 16 LS Contribution 254.31 15.07 3.83 3.83 Total: -1.00 -34.10 254.31 -6.35 -40.45 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.64 Total: 3.81 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.03 Total: 2.35 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.43 Total: -55.38 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.10 -6.35 -40.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137442181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.341 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds