Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00399 * 2 1 4 4 H 1.48494 * 109.47416 * 239.99758 * 3 2 1 5 5 H 1.48503 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47371 * 119.99633 * 3 2 1 7 7 C 1.38821 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99267 * 192.07548 * 7 2 1 9 9 N 1.36934 * 120.00025 * 12.07531 * 7 2 1 10 10 C 1.46923 * 120.63104 * 31.35415 * 9 7 2 11 11 C 1.53188 * 108.77737 * 126.39084 * 10 9 7 12 12 C 1.53035 * 109.31408 * 54.63191 * 11 10 9 13 13 C 1.53044 * 109.53897 * 298.64080 * 12 11 10 14 14 C 1.46921 * 120.63028 * 211.35121 * 9 7 2 15 15 H 1.09001 * 109.70309 * 113.75022 * 14 9 7 16 16 C 1.53006 * 109.58889 * 353.39893 * 14 9 7 17 17 C 1.50705 * 109.46787 * 65.70574 * 16 14 9 18 18 N 1.34777 * 119.99506 * 180.02562 * 17 16 14 19 19 O 1.21280 * 120.00373 * 0.02562 * 17 16 14 20 20 H 0.97006 * 119.99538 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.58624 * 6.60468 * 10 9 7 22 22 H 1.09003 * 109.58654 * 246.17915 * 10 9 7 23 23 H 1.09005 * 109.49582 * 294.68501 * 11 10 9 24 24 H 1.08995 * 109.52852 * 174.60507 * 11 10 9 25 25 H 1.08997 * 109.46640 * 178.61617 * 12 11 10 26 26 H 1.09004 * 109.45855 * 58.65518 * 12 11 10 27 27 H 1.09000 * 109.49153 * 301.40822 * 13 12 11 28 28 H 1.09002 * 109.49404 * 181.31493 * 13 12 11 29 29 H 1.08997 * 109.46619 * 305.71245 * 16 14 9 30 30 H 1.08998 * 109.47367 * 185.70554 * 16 14 9 31 31 H 0.97001 * 119.99903 * 0.02562 * 18 17 16 32 32 H 0.96998 * 120.00077 * 179.73061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0723 -1.2125 0.1962 9 7 1.3482 -2.3751 -0.2470 10 6 0.1809 -2.4020 -1.1388 11 6 0.4113 -3.4614 -2.2210 12 6 0.7256 -4.8037 -1.5564 13 6 2.0042 -4.6762 -0.7250 14 6 1.7917 -3.6305 0.3740 15 1 1.0327 -3.9833 1.0723 16 6 3.1066 -3.3969 1.1208 17 6 2.8676 -2.4614 2.2780 18 7 3.8902 -2.1098 3.0824 19 8 1.7552 -2.0250 2.4853 20 1 -0.4850 0.8401 -0.0004 21 1 0.0547 -1.4248 -1.6051 22 1 -0.7114 -2.6534 -0.5654 23 1 1.2494 -3.1621 -2.8505 24 1 -0.4859 -3.5593 -2.8320 25 1 0.8659 -5.5649 -2.3238 26 1 -0.1022 -5.0904 -0.9078 27 1 2.8272 -4.3655 -1.3687 28 1 2.2402 -5.6386 -0.2709 29 1 3.8365 -2.9560 0.4419 30 1 3.4860 -4.3478 1.4947 31 1 4.7800 -2.4586 2.9164 32 1 3.7373 -1.5046 3.8249 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137442181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = -49.761327 kcal Electronic energy + Delta-G solvation = -15222.252738 eV Core-core repulsion = 12795.948905 eV Total energy + Delta-G solvation = -2426.303833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52469 -38.65920 -34.80872 -34.28740 -33.42680 -31.61249 -28.48281 -26.93789 -23.73711 -22.93121 -20.91993 -20.66966 -18.38079 -17.84094 -17.31505 -17.05042 -15.97987 -15.62044 -14.87696 -14.79385 -14.73747 -14.32823 -14.01422 -13.33029 -13.05281 -12.75966 -12.51640 -12.46330 -12.21176 -11.98879 -11.69159 -11.48221 -11.06677 -11.02161 -10.52042 -10.41746 -10.21227 -8.40538 -7.69861 -5.14435 1.41468 1.44241 1.49443 2.17556 2.57406 2.96915 3.48621 3.71866 4.11922 4.24979 4.28082 4.42724 4.52379 4.72531 4.79863 4.86574 4.95353 5.11880 5.18679 5.26107 5.36849 5.48750 5.55071 5.63903 5.77060 5.89193 6.21201 6.54177 6.84310 7.31598 7.83610 8.02811 8.57355 9.38390 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.017017 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.576979 B = 1645.032380 C = 2488.110304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.282 1.282 7 C -0.214 4.214 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.179 3.821 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.119 4.119 14 C 0.172 3.828 15 H -0.002 1.002 16 C -0.124 4.124 17 C 0.506 3.494 18 N -0.854 5.854 19 O -0.559 6.559 20 H 0.238 0.762 21 H 0.048 0.952 22 H -0.023 1.023 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.412 0.588 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -9.797 0.083 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.249 4.249 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.230 1.230 6 H -0.208 1.208 7 C -0.345 4.345 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.144 4.144 13 C -0.158 4.158 14 C 0.066 3.934 15 H 0.016 0.984 16 C -0.164 4.164 17 C 0.292 3.708 18 N -0.420 5.420 19 O -0.435 6.435 20 H 0.047 0.953 21 H 0.066 0.934 22 H -0.005 1.005 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.986 -9.497 0.065 13.075 hybrid contribution 0.102 1.583 0.534 1.674 sum 9.088 -7.915 0.599 12.067 Atomic orbital electron populations 1.70178 1.06723 1.24478 1.57435 1.25747 0.95824 1.01009 1.02357 0.85610 0.77653 0.80755 0.78096 1.19887 1.23014 1.20820 1.19075 0.90761 0.84634 1.40030 0.91575 1.44199 1.33209 1.03592 1.50583 1.20515 0.87385 0.96965 0.89843 1.22019 1.00572 0.96492 0.97958 1.21382 0.97595 0.96456 0.98999 1.21949 0.97890 0.98490 0.97492 1.20481 0.92962 0.87565 0.92401 0.98388 1.21741 0.99551 0.99908 0.95223 1.20978 0.84461 0.81680 0.83705 1.43725 1.12082 1.52650 1.33495 1.90844 1.26042 1.54776 1.71871 0.95272 0.93382 1.00455 0.92654 0.92122 0.90181 0.93756 0.91558 0.89645 0.88203 0.85821 0.75695 0.77480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.74 11.13 21.65 0.24 -60.50 16 2 C -0.06 -3.31 5.01 84.86 0.43 -2.88 16 3 Si 0.95 47.72 29.57 68.60 2.03 49.75 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.21 -11.89 6.34 84.04 0.53 -11.35 16 8 H 0.07 3.46 5.69 -2.91 -0.02 3.45 16 9 N -0.59 -30.56 2.81 -675.24 -1.90 -32.45 16 10 C 0.18 9.29 5.26 86.36 0.45 9.75 16 11 C -0.13 -5.12 6.08 30.67 0.19 -4.93 16 12 C -0.11 -3.46 5.88 30.62 0.18 -3.28 16 13 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 14 C 0.17 7.13 2.47 44.97 0.11 7.24 16 15 H 0.00 -0.07 7.95 -2.39 -0.02 -0.09 16 16 C -0.12 -4.15 4.72 29.85 0.14 -4.01 16 17 C 0.51 20.06 6.40 87.66 0.56 20.62 16 18 N -0.85 -23.85 8.87 -173.53 -1.54 -25.39 16 19 O -0.56 -30.22 15.01 -3.03 -0.05 -30.27 16 20 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16 21 H 0.05 2.82 6.15 -2.38 -0.01 2.80 16 22 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.10 3.18 7.07 -2.39 -0.02 3.17 16 30 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.41 7.66 8.83 -92.71 -0.82 6.84 16 32 H 0.40 10.79 8.93 -92.71 -0.83 9.97 16 Total: -1.00 -78.69 254.31 1.03 -77.67 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.52 Total: 13.62 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 2.76 Total: 7.57 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.19 Total: -118.34 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -78.69 1.03 -77.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137442181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.908 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds