Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47106 * 240.00148 * 3 2 1 5 5 H 1.48496 * 109.46864 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 120.00003 * 3 2 1 7 7 C 1.38805 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00627 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.47015 * 125.64976 * 359.69487 * 14 12 11 16 16 C 1.54318 * 107.27876 * 180.96785 * 15 14 12 17 17 C 1.55160 * 102.86085 * 22.52445 * 16 15 14 18 18 C 1.47427 * 125.64593 * 180.02562 * 14 12 11 19 19 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 20 20 H 0.97006 * 119.99618 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.47059 * 60.00276 * 10 9 7 22 22 H 1.09004 * 109.47074 * 300.00232 * 10 9 7 23 23 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 24 24 H 1.09000 * 109.47611 * 300.00447 * 11 10 9 25 25 H 1.09008 * 109.88346 * 300.51450 * 15 14 12 26 26 H 1.09000 * 109.88326 * 61.67756 * 15 14 12 27 27 H 1.08995 * 110.92550 * 264.11299 * 16 15 14 28 28 H 1.08998 * 110.59238 * 140.78196 * 16 15 14 29 29 H 1.08998 * 111.00585 * 206.22911 * 17 16 15 30 30 H 1.09003 * 111.00094 * 82.37699 * 17 16 15 31 31 H 1.09001 * 110.36461 * 274.67480 * 18 14 12 32 32 H 1.08995 * 110.37080 * 36.88626 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 6 1.8175 -6.1248 -0.0026 13 8 3.0303 -6.1247 -0.0039 14 7 1.1436 -7.2920 -0.0027 15 6 -0.3193 -7.4367 0.0052 16 6 -0.6303 -8.9481 0.0267 17 6 0.6711 -9.5602 0.6092 18 6 1.7516 -8.6350 -0.0038 19 1 -0.4850 0.8400 0.0004 20 1 0.3556 -2.3880 -0.0005 21 1 2.6855 -3.7149 0.8878 22 1 2.6842 -3.7140 -0.8922 23 1 0.4363 -4.7617 -0.8901 24 1 0.4383 -4.7621 0.8899 25 1 -0.7345 -6.9583 0.8923 26 1 -0.7413 -6.9862 -0.8932 27 1 -0.8151 -9.3219 -0.9803 28 1 -1.4792 -9.1556 0.6782 29 1 0.8024 -10.5893 0.2751 30 1 0.6778 -9.5005 1.6975 31 1 1.9832 -8.9457 -1.0226 32 1 2.6530 -8.6440 0.6088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156886784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -29.781767 kcal Electronic energy + Delta-G solvation = -13819.201294 eV Core-core repulsion = 11393.763839 eV Total energy + Delta-G solvation = -2425.437454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90346 -37.38847 -34.80216 -32.15672 -31.44721 -29.46424 -28.54683 -24.62152 -23.18696 -21.59631 -21.06685 -19.06655 -17.25332 -16.73464 -16.61314 -15.24536 -14.72236 -14.42815 -13.69705 -13.65747 -13.34392 -13.06358 -12.94633 -12.41622 -12.24500 -11.59474 -11.43498 -11.08961 -10.97245 -10.94917 -10.75364 -10.66136 -10.08623 -9.68874 -9.54423 -8.81786 -8.62409 -6.87406 -5.71783 -3.00193 2.86859 3.03865 3.49536 3.52765 3.54863 4.28903 4.38403 4.64925 4.66717 5.00058 5.07171 5.16650 5.45995 5.48007 5.55990 5.59333 5.61136 5.66283 5.70366 5.81862 5.91388 6.10901 6.25823 6.36159 6.91919 6.96227 7.56544 7.77012 8.36185 8.47867 9.58408 10.14867 10.50595 11.51459 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.074163 B = 0.005326 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.455094 B = 5256.139908 C = 5577.329963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.168 3.832 11 C -0.141 4.141 12 C 0.534 3.466 13 O -0.537 6.537 14 N -0.628 5.628 15 C 0.099 3.901 16 C -0.132 4.132 17 C -0.134 4.134 18 C 0.104 3.896 19 H 0.255 0.745 20 H 0.382 0.618 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -19.342 0.338 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.380 5.380 10 C 0.040 3.960 11 C -0.181 4.181 12 C 0.324 3.676 13 O -0.413 6.413 14 N -0.364 5.364 15 C -0.025 4.025 16 C -0.170 4.170 17 C -0.172 4.172 18 C -0.019 4.019 19 H 0.065 0.935 20 H 0.216 0.784 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.317 -19.116 0.332 19.258 hybrid contribution -0.018 0.876 -0.021 0.877 sum -2.336 -18.239 0.311 18.391 Atomic orbital electron populations 1.69647 1.05114 1.25716 1.58137 1.24729 0.95551 0.97669 1.03132 0.86232 0.78486 0.83370 0.77921 1.21235 1.21696 1.21242 1.19219 0.91160 0.84029 1.42343 0.91091 1.42341 1.05790 1.00038 1.89820 1.20382 0.92492 0.83916 0.99219 1.21817 1.00319 0.91819 1.04158 1.20619 0.87737 0.84319 0.74915 1.90690 1.14045 1.87099 1.49490 1.48614 1.07154 1.05696 1.74961 1.22044 0.81010 0.97103 1.02302 1.22638 0.98188 0.94089 1.02062 1.22789 0.94486 0.98954 1.01001 1.22171 0.96982 0.81913 1.00837 0.93524 0.78422 0.95454 0.95450 0.88965 0.88959 0.91082 0.91112 0.90520 0.89977 0.89954 0.90596 0.91734 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.74 -19.62 5.60 -59.91 -0.34 -19.95 16 10 C 0.17 3.78 5.55 -4.05 -0.02 3.76 16 11 C -0.14 -2.45 5.01 -27.88 -0.14 -2.59 16 12 C 0.53 9.15 7.85 -10.98 -0.09 9.07 16 13 O -0.54 -11.18 16.24 5.56 0.09 -11.09 16 14 N -0.63 -8.26 3.33 -170.54 -0.57 -8.83 16 15 C 0.10 0.95 6.48 -3.07 -0.02 0.93 16 16 C -0.13 -0.91 6.95 -24.90 -0.17 -1.09 16 17 C -0.13 -0.99 7.08 -24.59 -0.17 -1.17 16 18 C 0.10 1.12 6.91 -2.54 -0.02 1.11 16 19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 20 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 21 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 22 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 23 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 25 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -34.12 271.73 -6.82 -40.94 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.92 Total: 2.56 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.88 Total: 2.37 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.18 Total: -56.89 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.12 -6.82 -40.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156886784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.161 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds