Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47106 * 240.00148 * 3 2 1 5 5 H 1.48496 * 109.46864 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 120.00003 * 3 2 1 7 7 C 1.38805 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00627 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.47015 * 125.64976 * 359.69487 * 14 12 11 16 16 C 1.54318 * 107.27876 * 180.96785 * 15 14 12 17 17 C 1.55160 * 102.86085 * 22.52445 * 16 15 14 18 18 C 1.47427 * 125.64593 * 180.02562 * 14 12 11 19 19 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 20 20 H 0.97006 * 119.99618 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.47059 * 60.00276 * 10 9 7 22 22 H 1.09004 * 109.47074 * 300.00232 * 10 9 7 23 23 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 24 24 H 1.09000 * 109.47611 * 300.00447 * 11 10 9 25 25 H 1.09008 * 109.88346 * 300.51450 * 15 14 12 26 26 H 1.09000 * 109.88326 * 61.67756 * 15 14 12 27 27 H 1.08995 * 110.92550 * 264.11299 * 16 15 14 28 28 H 1.08998 * 110.59238 * 140.78196 * 16 15 14 29 29 H 1.08998 * 111.00585 * 206.22911 * 17 16 15 30 30 H 1.09003 * 111.00094 * 82.37699 * 17 16 15 31 31 H 1.09001 * 110.36461 * 274.67480 * 18 14 12 32 32 H 1.08995 * 110.37080 * 36.88626 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 6 1.8175 -6.1248 -0.0026 13 8 3.0303 -6.1247 -0.0039 14 7 1.1436 -7.2920 -0.0027 15 6 -0.3193 -7.4367 0.0052 16 6 -0.6303 -8.9481 0.0267 17 6 0.6711 -9.5602 0.6092 18 6 1.7516 -8.6350 -0.0038 19 1 -0.4850 0.8400 0.0004 20 1 0.3556 -2.3880 -0.0005 21 1 2.6855 -3.7149 0.8878 22 1 2.6842 -3.7140 -0.8922 23 1 0.4363 -4.7617 -0.8901 24 1 0.4383 -4.7621 0.8899 25 1 -0.7345 -6.9583 0.8923 26 1 -0.7413 -6.9862 -0.8932 27 1 -0.8151 -9.3219 -0.9803 28 1 -1.4792 -9.1556 0.6782 29 1 0.8024 -10.5893 0.2751 30 1 0.6778 -9.5005 1.6975 31 1 1.9832 -8.9457 -1.0226 32 1 2.6530 -8.6440 0.6088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156886784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -53.841138 kcal Electronic energy + Delta-G solvation = -13820.244586 eV Core-core repulsion = 11393.763839 eV Total energy + Delta-G solvation = -2426.480747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07256 -38.47702 -36.78220 -33.94173 -32.72102 -30.84102 -29.74247 -26.39079 -24.61892 -23.05231 -21.96314 -20.30941 -19.17404 -18.14196 -17.57099 -16.64705 -16.48276 -15.91899 -15.28618 -14.98983 -14.68376 -14.38507 -14.17442 -13.72068 -13.24856 -12.99451 -12.87571 -12.62772 -12.45330 -12.18835 -12.13225 -12.07479 -11.84648 -11.56706 -10.98089 -10.96743 -9.69458 -9.06566 -7.98306 -5.28610 1.47030 1.50785 1.53905 1.57069 1.94703 2.55666 3.34977 3.42557 3.70424 3.84551 4.00319 4.06172 4.21239 4.33130 4.36486 4.49893 4.58515 4.72146 4.88331 4.95852 5.00633 5.10598 5.11925 5.14529 5.30183 5.42822 5.46071 6.23716 6.42360 7.08210 7.30764 8.00587 8.29685 9.24774 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.074163 B = 0.005326 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.455094 B = 5256.139908 C = 5577.329963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.743 5.743 10 C 0.171 3.829 11 C -0.126 4.126 12 C 0.531 3.469 13 O -0.586 6.586 14 N -0.622 5.622 15 C 0.085 3.915 16 C -0.122 4.122 17 C -0.123 4.123 18 C 0.093 3.907 19 H 0.255 0.745 20 H 0.379 0.621 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -20.429 0.344 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.386 5.386 10 C 0.044 3.956 11 C -0.166 4.166 12 C 0.321 3.679 13 O -0.467 6.467 14 N -0.356 5.356 15 C -0.037 4.037 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.029 4.029 19 H 0.063 0.937 20 H 0.211 0.789 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.316 -20.263 0.338 20.536 hybrid contribution 0.264 1.134 -0.029 1.165 sum -3.052 -19.129 0.310 19.374 Atomic orbital electron populations 1.69787 1.06454 1.26466 1.58853 1.25569 0.96525 1.01008 1.02970 0.85175 0.77295 0.78856 0.78198 1.20434 1.21396 1.20439 1.19565 0.91436 0.85430 1.42442 0.91303 1.42452 1.05708 1.00782 1.89700 1.20329 0.93279 0.84404 0.97599 1.21596 0.99095 0.90259 1.05657 1.20452 0.87090 0.85343 0.75047 1.90665 1.15906 1.87873 1.52263 1.48656 1.09002 1.05409 1.72580 1.22403 0.78554 0.99719 1.02983 1.22664 0.98459 0.91498 1.03365 1.22782 0.93111 0.99318 1.00897 1.22430 0.97733 0.81436 1.01339 0.93656 0.78867 0.96980 0.96983 0.87416 0.87403 0.90448 0.90427 0.89267 0.87797 0.87445 0.90500 0.91133 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.26 -15.26 9.99 84.03 0.84 -14.42 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -40.14 5.60 -343.46 -1.92 -42.06 16 10 C 0.17 7.88 5.55 86.38 0.48 8.36 16 11 C -0.13 -4.35 5.01 29.85 0.15 -4.20 16 12 C 0.53 18.22 7.85 87.66 0.69 18.91 16 13 O -0.59 -25.16 16.24 -3.02 -0.05 -25.21 16 14 N -0.62 -15.67 3.33 -811.84 -2.70 -18.37 16 15 C 0.09 1.43 6.48 86.73 0.56 2.00 16 16 C -0.12 -1.24 6.95 31.78 0.22 -1.02 16 17 C -0.12 -1.45 7.08 31.98 0.23 -1.22 16 18 C 0.09 1.89 6.91 86.85 0.60 2.49 16 19 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 20 H 0.38 20.70 7.67 -92.70 -0.71 19.99 16 21 H 0.01 0.60 8.10 -2.39 -0.02 0.58 16 22 H 0.01 0.60 8.10 -2.38 -0.02 0.58 16 23 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 24 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 25 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 Total: -1.00 -73.77 271.73 2.25 -71.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.38 Total: 16.68 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.23 Total: 7.35 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.34 Total: -119.59 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -73.77 2.25 -71.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156886784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.674 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds