Wall clock time and date at job start Mon Mar 30 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 O 1.21275 * 120.00486 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99600 * 179.97438 * 11 10 9 14 14 C 1.46924 * 120.63028 * 359.71961 * 13 11 10 15 15 C 1.53626 * 108.54179 * 126.37076 * 14 13 11 16 16 C 1.53035 * 109.24466 * 54.85291 * 15 14 13 17 17 C 1.53038 * 109.53819 * 298.51167 * 16 15 14 18 18 C 1.46930 * 120.62709 * 179.97438 * 13 11 10 19 19 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 22 22 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 23 23 H 1.09002 * 109.58436 * 246.19536 * 14 13 11 24 24 H 1.08997 * 109.59253 * 6.62562 * 14 13 11 25 25 H 1.09003 * 109.63304 * 294.85777 * 15 14 13 26 26 H 1.09007 * 109.45711 * 174.74157 * 15 14 13 27 27 H 1.09004 * 109.46062 * 178.48885 * 16 15 14 28 28 H 1.09007 * 109.46087 * 58.53168 * 16 15 14 29 29 H 1.09001 * 109.49946 * 301.41137 * 17 16 15 30 30 H 1.09007 * 109.49555 * 181.31548 * 17 16 15 31 31 H 1.08999 * 109.58634 * 353.37842 * 18 13 11 32 32 H 1.08998 * 109.58115 * 113.79862 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 8 -0.1138 -4.5806 0.0115 13 7 1.5278 -6.0729 0.0187 14 6 2.9692 -6.3573 0.0140 15 6 3.2867 -7.2917 1.1913 16 6 2.4006 -8.5361 1.1008 17 6 0.9295 -8.1250 1.1957 18 6 0.5853 -7.2000 0.0246 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3880 0.0005 21 1 2.6849 -3.7190 -0.8822 22 1 2.6842 -3.7101 0.8977 23 1 3.2432 -6.8407 -0.9238 24 1 3.5258 -5.4266 0.1240 25 1 3.0934 -6.7750 2.1314 26 1 4.3350 -7.5875 1.1477 27 1 2.6418 -9.2141 1.9195 28 1 2.5765 -9.0388 0.1496 29 1 0.7583 -7.6005 2.1358 30 1 0.2999 -9.0139 1.1546 31 1 -0.4316 -6.8254 0.1415 32 1 0.6685 -7.7507 -0.9124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161604369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:12 Heat of formation + Delta-G solvation = -54.771182 kcal Electronic energy + Delta-G solvation = -14230.485333 eV Core-core repulsion = 11803.964256 eV Total energy + Delta-G solvation = -2426.521077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15984 -38.41318 -36.23734 -34.00024 -33.10198 -31.98425 -28.67164 -26.20636 -24.83344 -23.83185 -21.74002 -20.06349 -19.42697 -17.81148 -17.13991 -16.59423 -16.38631 -15.46665 -15.24378 -15.14039 -14.82577 -14.64655 -14.23364 -13.72554 -13.55991 -13.25687 -12.96568 -12.70450 -12.19793 -12.16044 -11.90327 -11.81799 -11.56792 -11.46672 -11.01774 -10.76656 -9.64541 -9.10308 -7.94933 -5.29394 1.47871 1.53198 1.59282 1.59921 1.98886 2.57370 3.37794 3.61914 3.88408 4.00511 4.02451 4.05953 4.18323 4.37604 4.50990 4.57783 4.63746 4.71277 4.86206 4.94608 4.96485 5.09778 5.17602 5.25008 5.44598 5.47810 5.63810 6.20143 6.36076 7.16688 7.29478 8.01091 8.26521 9.29148 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063007 B = 0.006467 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.288859 B = 4328.884169 C = 4647.781638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.081 4.081 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.254 4.254 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.137 3.863 11 C 0.506 3.494 12 O -0.585 6.585 13 N -0.609 5.609 14 C 0.097 3.903 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 H 0.252 0.748 20 H 0.377 0.623 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -18.981 1.191 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.385 4.385 8 H 0.109 0.891 9 N -0.391 5.391 10 C 0.008 3.992 11 C 0.295 3.705 12 O -0.465 6.465 13 N -0.343 5.343 14 C -0.025 4.025 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.018 4.018 19 H 0.061 0.939 20 H 0.210 0.790 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.162 -18.788 1.187 20.937 hybrid contribution -0.495 1.097 0.039 1.204 sum 8.667 -17.691 1.226 19.738 Atomic orbital electron populations 1.69928 1.07303 1.26398 1.58812 1.25843 0.96429 1.01953 1.03053 0.84997 0.76957 0.77848 0.78585 1.19685 1.22371 1.19723 1.19719 0.91940 0.84527 1.42323 0.89120 1.42529 1.06281 1.00603 1.89650 1.20685 0.93137 0.84092 1.01319 1.21220 0.89338 0.85206 0.74762 1.90630 1.19199 1.84856 1.51805 1.48222 1.08963 1.04377 1.72780 1.22186 0.78397 1.01369 1.00529 1.22008 1.01583 0.96130 0.97337 1.21522 0.93000 0.97216 1.03498 1.21887 0.98753 0.99155 0.96920 1.21701 0.93136 0.86863 1.00107 0.93920 0.78991 0.91356 0.91570 0.89013 0.89239 0.92846 0.87984 0.90216 0.90248 0.93399 0.88875 0.92154 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.12 13.06 21.65 0.28 -63.84 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 3 Si 0.99 47.06 29.55 68.60 2.03 49.08 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.75 -42.18 5.57 -347.18 -1.94 -44.11 16 10 C 0.14 5.80 5.09 85.63 0.44 6.24 16 11 C 0.51 20.73 7.77 87.66 0.68 21.41 16 12 O -0.59 -29.95 15.08 -3.01 -0.05 -30.00 16 13 N -0.61 -17.78 2.97 -818.13 -2.43 -20.20 16 14 C 0.10 1.92 6.37 86.51 0.55 2.47 16 15 C -0.13 -2.03 6.10 30.82 0.19 -1.84 16 16 C -0.11 -1.56 5.88 30.62 0.18 -1.38 16 17 C -0.13 -2.39 6.08 30.66 0.19 -2.20 16 18 C 0.10 2.61 6.43 86.35 0.55 3.17 16 19 H 0.25 15.92 8.31 -92.71 -0.77 15.15 16 20 H 0.38 24.15 6.63 -92.71 -0.61 23.53 16 21 H 0.07 2.61 7.93 -2.38 -0.02 2.59 16 22 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 23 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.09 1.80 5.93 -2.39 -0.01 1.79 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.90 7.01 -2.39 -0.02 1.88 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.17 263.23 2.47 -74.70 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.49 Total: 24.85 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.08 Total: 9.52 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -4.08 Total: -128.16 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.17 2.47 -74.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161604369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.926 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds