Wall clock time and date at job start Mon Mar 30 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00281 * 2 1 4 4 H 1.48502 * 109.47218 * 269.99754 * 3 2 1 5 5 H 1.48500 * 109.47288 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.47204 * 149.99902 * 3 2 1 7 7 C 1.38958 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00177 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99878 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99677 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00023 * 179.97438 * 10 9 7 13 13 C 1.53001 * 110.53622 * 57.38948 * 12 10 9 14 14 N 1.46900 * 109.47092 * 302.61268 * 13 12 10 15 15 C 1.54887 * 110.48856 * 294.77859 * 12 10 9 16 16 C 1.54893 * 102.74533 * 279.26401 * 15 12 10 17 17 C 1.54266 * 104.19500 * 322.05712 * 16 15 12 18 18 C 1.53872 * 106.60044 * 23.61099 * 17 16 15 19 19 H 0.97004 * 119.99626 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00139 * 359.97438 * 9 7 2 21 21 H 1.08998 * 109.47329 * 62.61047 * 13 12 10 22 22 H 1.08994 * 109.47151 * 182.61220 * 13 12 10 23 23 H 1.00903 * 111.00139 * 180.02562 * 14 13 12 24 24 H 1.00906 * 110.99787 * 303.95176 * 14 13 12 25 25 H 1.09001 * 110.75744 * 37.57303 * 15 12 10 26 26 H 1.09000 * 110.75698 * 160.95121 * 15 12 10 27 27 H 1.09002 * 110.48578 * 203.38190 * 16 15 12 28 28 H 1.09001 * 110.49013 * 80.73631 * 16 15 12 29 29 H 1.09002 * 110.02957 * 264.32709 * 17 16 15 30 30 H 1.08996 * 110.03427 * 142.89930 * 17 16 15 31 31 H 1.09003 * 110.03622 * 240.71485 * 18 17 16 32 32 H 1.09005 * 110.03465 * 119.28158 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5580 -0.0005 11 8 3.2099 -3.5580 -0.0010 12 6 1.2435 -4.8630 0.0000 13 6 0.3059 -4.9420 -1.2065 14 7 -0.6177 -3.7998 -1.1845 15 6 0.4463 -5.0281 1.3177 16 6 1.5261 -5.5262 2.3103 17 6 2.4046 -6.4749 1.4688 18 6 2.2250 -6.0532 -0.0001 19 1 -0.4850 0.8401 0.0004 20 1 0.3532 -2.3906 0.0002 21 1 0.8926 -4.9171 -2.1248 22 1 -0.2634 -5.8704 -1.1641 23 1 -1.2482 -3.8294 -1.9717 24 1 -1.1275 -3.7638 -0.3145 25 1 0.0345 -4.0726 1.6425 26 1 -0.3432 -5.7706 1.2011 27 1 1.0644 -6.0666 3.1367 28 1 2.1168 -4.6894 2.6830 29 1 2.0769 -7.5056 1.6041 30 1 3.4497 -6.3735 1.7612 31 1 1.8100 -6.8792 -0.5777 32 1 3.1829 -5.7471 -0.4206 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168142824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:51 Heat of formation + Delta-G solvation = -75.402251 kcal Electronic energy + Delta-G solvation = -14928.207263 eV Core-core repulsion = 12500.791556 eV Total energy + Delta-G solvation = -2427.415707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06545 -37.95387 -35.97130 -34.99271 -32.95728 -30.15375 -29.51800 -26.89616 -24.56784 -22.99124 -21.30036 -20.10654 -19.30109 -17.51888 -16.95696 -16.65160 -16.12813 -15.80650 -15.33126 -15.26680 -14.69960 -14.06913 -13.85814 -13.73076 -13.44341 -12.90840 -12.34496 -12.24869 -12.14578 -12.06017 -11.93381 -11.76418 -11.57809 -11.35837 -11.25391 -10.10882 -9.83302 -9.40754 -8.36946 -5.82494 1.38433 1.40440 1.53493 2.18962 2.34279 3.26613 3.36603 3.52698 3.77315 3.88468 4.08251 4.35851 4.45967 4.54967 4.60266 4.71865 4.82495 4.85978 4.95674 5.05756 5.11815 5.19794 5.33589 5.39504 5.49112 5.60149 6.12017 6.32986 6.67716 6.80161 7.24870 7.83990 8.39999 8.79732 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.009967 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.493378 B = 2808.612610 C = 3075.094715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.011 4.011 3 Si 0.987 3.013 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.340 4.340 8 H 0.067 0.933 9 N -0.548 5.548 10 C 0.448 3.552 11 O -0.654 6.654 12 C -0.076 4.076 13 C 0.086 3.914 14 N -0.860 5.860 15 C -0.107 4.107 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.104 4.104 19 H 0.275 0.725 20 H 0.410 0.590 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.354 0.646 24 H 0.345 0.655 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -11.243 1.067 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.211 4.211 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.187 5.187 10 C 0.235 3.765 11 O -0.544 6.544 12 C -0.080 4.080 13 C -0.045 4.045 14 N -0.393 5.393 15 C -0.145 4.145 16 C -0.161 4.161 17 C -0.150 4.150 18 C -0.143 4.143 19 H 0.084 0.916 20 H 0.251 0.749 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.169 0.831 24 H 0.159 0.841 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.878 -10.610 0.992 11.340 hybrid contribution -0.422 0.560 -0.051 0.703 sum -4.299 -10.050 0.942 10.972 Atomic orbital electron populations 1.69710 1.06481 1.28740 1.49875 1.25963 0.96598 1.01978 0.96583 0.85029 0.77908 0.77419 0.78514 1.19843 1.19203 1.20198 1.19683 0.92381 0.85009 1.49937 0.91488 1.42142 1.10625 1.03590 1.62324 1.20548 0.87439 0.86452 0.82041 1.90417 1.16617 1.88277 1.59122 1.21619 0.96215 0.92544 0.97583 1.21712 0.93812 0.92779 0.96226 1.58421 1.26084 1.46098 1.08726 1.22593 0.97820 1.01383 0.92667 1.22333 0.96833 0.98440 0.98526 1.22045 0.99230 0.99971 0.93798 1.22054 0.98335 0.95668 0.98200 0.91593 0.74908 0.92510 0.91054 0.83093 0.84102 0.93043 0.87407 0.88765 0.95349 0.88615 0.93530 0.88640 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.52 13.05 21.67 0.28 -50.23 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 0.99 45.05 29.55 68.60 2.03 47.07 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.34 -20.65 9.68 84.04 0.81 -19.84 16 8 H 0.07 4.37 7.16 -2.91 -0.02 4.35 16 9 N -0.55 -30.08 4.74 -306.98 -1.46 -31.54 16 10 C 0.45 23.07 6.26 87.66 0.55 23.62 16 11 O -0.65 -39.36 15.01 -3.06 -0.05 -39.40 16 12 C -0.08 -2.75 0.61 -51.85 -0.03 -2.78 16 13 C 0.09 2.58 5.64 86.30 0.49 3.07 16 14 N -0.86 -27.36 7.06 -186.72 -1.32 -28.68 16 15 C -0.11 -3.23 4.98 31.89 0.16 -3.07 16 16 C -0.12 -3.73 6.61 31.67 0.21 -3.52 16 17 C -0.11 -3.20 6.80 31.32 0.21 -2.99 16 18 C -0.10 -3.36 5.73 31.32 0.18 -3.18 16 19 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 20 H 0.41 21.04 5.19 -92.71 -0.48 20.56 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 23 H 0.35 9.29 9.08 -89.69 -0.81 8.48 16 24 H 0.34 10.28 7.64 -89.69 -0.69 9.59 16 25 H 0.05 1.77 7.65 -2.39 -0.02 1.76 16 26 H 0.11 2.36 8.04 -2.39 -0.02 2.34 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 2.32 7.84 -2.39 -0.02 2.30 16 32 H 0.05 1.84 6.89 -2.38 -0.02 1.83 16 Total: -1.00 -72.85 259.17 1.69 -71.15 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.84 Total: 40.47 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 3.04 Total: -8.84 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -2.49 Total: -110.45 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.85 1.69 -71.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168142824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.249 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds