Wall clock time and date at job start Mon Mar 30 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48500 * 109.46685 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99586 * 3 2 1 6 6 H 1.48502 * 109.47120 * 59.99923 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.08996 * 110.85773 * 328.79486 * 13 12 11 15 15 C 1.54481 * 110.96620 * 92.62187 * 13 12 11 16 16 N 1.46764 * 105.46878 * 143.53563 * 15 13 12 17 17 C 1.34417 * 111.30534 * 342.98440 * 16 15 13 18 18 O 1.21284 * 124.94569 * 180.37959 * 17 16 15 19 19 C 1.51287 * 110.11163 * 0.40341 * 17 16 15 20 20 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 22 22 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 23 23 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 24 24 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 25 25 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 26 26 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 27 27 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 28 28 H 1.08996 * 110.24627 * 262.53206 * 15 13 12 29 29 H 1.09000 * 110.24961 * 24.53638 * 15 13 12 30 30 H 0.97007 * 124.34708 * 162.96091 * 16 15 13 31 31 H 1.08997 * 110.48948 * 257.57537 * 19 17 16 32 32 H 1.09008 * 110.59385 * 134.98959 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 1 0.7843 -7.3210 0.5286 15 6 1.5288 -7.9120 -1.4405 16 7 1.6923 -9.3684 -1.3610 17 6 2.3082 -9.7292 -0.2220 18 8 2.5735 -10.8700 0.0930 19 6 2.6217 -8.5053 0.6101 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8895 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.8535 -5.0450 -0.8886 26 1 0.8542 -5.0446 0.8914 27 1 3.0694 -6.0365 -0.7813 28 1 0.5270 -7.6635 -1.7908 29 1 2.2788 -7.4840 -2.1057 30 1 1.3938 -9.9906 -2.0427 31 1 3.6760 -8.2433 0.5213 32 1 2.3581 -8.6738 1.6544 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229133399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:50 Heat of formation + Delta-G solvation = -76.772658 kcal Electronic energy + Delta-G solvation = -13519.240726 eV Core-core repulsion = 11091.765593 eV Total energy + Delta-G solvation = -2427.475132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31126 -38.36264 -36.62165 -35.13031 -33.13924 -30.80597 -28.46271 -27.18103 -24.29130 -22.40275 -21.74258 -21.47978 -18.52206 -18.37276 -17.36579 -16.63381 -16.48700 -15.95752 -15.44828 -15.06357 -14.77851 -14.39525 -14.17376 -13.82809 -13.52086 -13.33727 -12.87332 -12.54844 -12.43214 -12.19860 -12.17368 -11.48724 -11.37304 -11.17471 -10.90975 -10.52323 -10.16746 -9.37994 -8.17605 -6.27640 1.41993 1.42987 1.51799 1.55730 2.39754 2.43379 3.00963 3.16208 3.54981 3.58566 4.06177 4.07732 4.35280 4.45584 4.59966 4.62804 4.77957 4.87420 4.95543 5.08845 5.20211 5.31216 5.57418 5.78819 5.81913 5.91254 5.94004 6.06373 6.31042 6.48035 6.90504 7.20001 7.41771 8.94239 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.097852 B = 0.004339 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.077824 B = 6451.787688 C = 6550.842854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.095 4.095 11 C 0.071 3.929 12 N -0.675 5.675 13 C 0.080 3.920 14 H 0.102 0.898 15 C 0.074 3.926 16 N -0.719 5.719 17 C 0.516 3.484 18 O -0.588 6.588 19 C -0.141 4.141 20 H 0.263 0.737 21 H -0.006 1.006 22 H -0.008 1.008 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.351 0.649 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.416 0.584 31 H 0.117 0.883 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -13.787 -3.420 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.058 4.058 12 N -0.307 5.307 13 C -0.032 4.032 14 H 0.120 0.880 15 C -0.052 4.052 16 N -0.373 5.373 17 C 0.303 3.697 18 O -0.469 6.469 19 C -0.182 4.182 20 H 0.071 0.929 21 H 0.013 0.987 22 H 0.010 0.990 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.255 0.745 31 H 0.135 0.865 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.104 -14.143 -2.498 14.693 hybrid contribution -0.401 0.727 -1.204 1.462 sum 2.704 -13.416 -3.702 14.178 Atomic orbital electron populations 1.70091 1.07717 1.27607 1.52012 1.25946 0.95734 1.03245 0.94899 0.85447 0.79159 0.79038 0.77696 1.18619 1.20438 1.20562 1.21766 0.93569 0.92542 1.50022 0.92286 1.18994 0.94521 0.93049 0.94929 1.21388 0.98039 0.93021 1.00883 1.21906 0.93883 0.89543 1.00445 1.60462 1.19342 1.00251 1.50601 1.22497 0.97544 0.88801 0.94335 0.87961 1.23066 1.04142 0.79293 0.98714 1.46210 1.59940 1.09469 1.21704 1.21316 0.75671 0.89879 0.82792 1.90724 1.56715 1.24244 1.75192 1.22366 1.03559 0.91460 1.00780 0.92857 0.98731 0.99005 0.93039 0.92808 0.94563 0.91655 0.82820 0.88540 0.89515 0.74486 0.86482 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.56 5.41 30.59 0.17 -3.39 16 11 C 0.07 2.00 5.55 86.30 0.48 2.48 16 12 N -0.68 -14.49 6.37 -486.11 -3.10 -17.58 16 13 C 0.08 1.38 3.49 45.97 0.16 1.54 16 14 H 0.10 1.78 7.83 -2.39 -0.02 1.76 16 15 C 0.07 1.01 7.48 86.83 0.65 1.66 16 16 N -0.72 -11.63 6.24 -459.80 -2.87 -14.50 16 17 C 0.52 11.63 8.43 87.90 0.74 12.37 16 18 O -0.59 -18.59 18.03 -3.04 -0.05 -18.65 16 19 C -0.14 -2.59 6.59 30.59 0.20 -2.39 16 20 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 21 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 22 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 27 H 0.35 6.62 8.07 -89.69 -0.72 5.90 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.04 7.55 -2.39 -0.02 1.02 16 30 H 0.42 5.49 8.96 -92.70 -0.83 4.66 16 31 H 0.12 2.06 8.08 -2.39 -0.02 2.04 16 32 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -68.15 272.90 -0.91 -69.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.44 Total: 7.51 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 3.24 Total: -15.85 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -5.68 Total: -87.61 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.15 -0.91 -69.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229133399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.717 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds