Wall clock time and date at job start Mon Mar 30 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 110.05618 * 2 1 4 4 C 1.54268 * 110.03002 * 121.41531 * 2 1 3 5 5 H 1.08996 * 110.60186 * 214.40960 * 4 2 1 6 6 C 1.50705 * 110.48619 * 336.99890 * 4 2 1 7 7 H 1.08003 * 119.99939 * 79.96457 * 6 4 2 8 8 C 1.37873 * 119.99905 * 259.97107 * 6 4 2 9 9 N 1.31519 * 120.00290 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 120.00020 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47460 * 59.99811 * 10 8 6 12 12 H 1.48506 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47047 * 299.99285 * 10 8 6 14 14 C 1.54891 * 104.19739 * 95.67342 * 4 2 1 15 15 C 1.54888 * 102.74632 * 37.94167 * 14 4 2 16 16 C 1.53871 * 110.03365 * 238.57773 * 2 1 3 17 17 H 1.08996 * 110.03525 * 0.02562 * 16 2 1 18 18 C 1.50709 * 110.02841 * 121.43342 * 16 2 1 19 19 O 1.20828 * 119.99689 * 87.66059 * 18 16 2 20 20 O 1.34228 * 120.00072 * 267.66048 * 18 16 2 21 21 H 1.09003 * 109.47558 * 303.83387 * 1 2 3 22 22 H 1.09011 * 109.47114 * 63.83174 * 1 2 3 23 23 H 1.09003 * 109.47574 * 183.82578 * 1 2 3 24 24 H 1.09004 * 109.47099 * 179.08970 * 3 2 1 25 25 H 1.08998 * 109.47239 * 299.09112 * 3 2 1 26 26 H 1.09004 * 109.46874 * 59.09652 * 3 2 1 27 27 H 0.96996 * 120.00527 * 180.02562 * 9 8 6 28 28 H 1.09001 * 110.75377 * 279.62982 * 14 4 2 29 29 H 1.08994 * 110.75571 * 156.25693 * 14 4 2 30 30 H 1.09008 * 110.48204 * 80.73496 * 15 14 4 31 31 H 1.09000 * 110.48679 * 203.37732 * 15 14 4 32 32 H 0.96695 * 117.00079 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0583 -0.7555 1.2369 5 1 2.9805 -0.3010 1.5989 6 6 1.0181 -0.7750 2.3272 7 1 0.2056 -1.4853 2.2857 8 6 1.1036 0.1141 3.3775 9 7 2.0932 0.9789 3.4283 10 14 -0.1854 0.0894 4.7293 11 1 -0.1887 -1.2424 5.3861 12 1 0.1314 1.1357 5.7345 13 1 -1.5234 0.3553 4.1424 14 6 2.3279 -2.1902 0.7192 15 6 2.8873 -1.9407 -0.7034 16 6 2.0571 -0.7537 -1.2336 17 1 1.2230 -1.1190 -1.8326 18 6 2.9276 0.1564 -2.0614 19 8 4.1081 0.2469 -1.8203 20 8 2.3916 0.8664 -3.0665 21 1 -0.3634 0.5722 0.8536 22 1 -0.3634 0.4533 -0.9224 23 1 -0.3634 -1.0254 0.0686 24 1 3.1445 1.4261 0.0163 25 1 1.7099 1.9499 -0.8980 26 1 1.6834 1.9595 0.8818 27 1 2.1535 1.6041 4.1674 28 1 1.4029 -2.7651 0.6752 29 1 3.0673 -2.6931 1.3424 30 1 3.9440 -1.6767 -0.6569 31 1 2.7401 -2.8198 -1.3308 32 1 2.9897 1.4359 -3.5695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238203954.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:52 Heat of formation + Delta-G solvation = -117.647174 kcal Electronic energy + Delta-G solvation = -15124.099798 eV Core-core repulsion = 12662.559462 eV Total energy + Delta-G solvation = -2461.540336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.28268 -37.65720 -35.62023 -32.57354 -31.25772 -29.00507 -26.35883 -25.29072 -23.01127 -21.93939 -19.39823 -18.02829 -17.55940 -16.31787 -15.70825 -15.24481 -14.64154 -13.83456 -13.62365 -12.78963 -12.48889 -12.29936 -12.00484 -11.79894 -11.17368 -11.11430 -11.03513 -10.85440 -10.58074 -10.48915 -10.28941 -10.01080 -9.79553 -9.65661 -9.36665 -8.98750 -8.79625 -8.39062 -5.99590 -4.00469 2.72581 3.31429 3.37270 3.39359 3.53968 4.43950 5.17137 5.37539 5.46996 5.63353 5.93395 6.15295 6.21458 6.28956 6.35870 6.41419 6.54691 6.57278 6.83060 6.85456 6.92518 6.93876 7.05443 7.21210 7.38430 7.42190 7.61112 7.83300 7.98911 8.36638 8.47146 9.06430 9.60482 11.09096 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044956 B = 0.010338 C = 0.009897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.682365 B = 2707.873094 C = 2828.356954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.045 4.045 3 C -0.139 4.139 4 C 0.048 3.952 5 H 0.065 0.935 6 C -0.501 4.501 7 H 0.055 0.945 8 C 0.065 3.935 9 N -0.888 5.888 10 Si 0.885 3.115 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.082 4.082 17 H 0.090 0.910 18 C 0.493 3.507 19 O -0.522 6.522 20 O -0.522 6.522 21 H 0.068 0.932 22 H 0.022 0.978 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.260 0.740 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -1.503 -8.826 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.046 4.046 3 C -0.196 4.196 4 C 0.029 3.971 5 H 0.084 0.916 6 C -0.539 4.539 7 H 0.073 0.927 8 C -0.137 4.137 9 N -0.526 5.526 10 Si 0.713 3.287 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.102 4.102 17 H 0.108 0.892 18 C 0.337 3.663 19 O -0.411 6.411 20 O -0.334 6.334 21 H 0.087 0.913 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.026 -1.578 -8.407 8.615 hybrid contribution -0.284 0.530 0.348 0.695 sum -1.310 -1.048 -8.059 8.232 Atomic orbital electron populations 1.21645 0.94413 1.01055 0.99439 1.21393 0.95593 0.94769 0.92866 1.21972 1.00399 0.96392 1.00824 1.19757 0.98108 0.88772 0.90436 0.91628 1.20979 1.09888 1.17319 1.05735 0.92718 1.24981 0.95387 0.95583 0.97719 1.69924 1.30595 1.20300 1.31793 0.86783 0.82256 0.77647 0.82043 1.20339 1.21460 1.20267 1.22625 0.99024 1.00960 0.92858 1.22455 1.00049 0.94628 0.98285 1.22061 0.97123 0.94897 0.96093 0.89192 1.23747 0.87563 0.78065 0.76948 1.90649 1.18180 1.64471 1.67780 1.84626 1.47067 1.56563 1.45098 0.91319 0.95857 0.93434 0.93284 0.95267 0.90552 0.92967 0.92678 0.92699 0.90545 0.92723 0.74492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 7.19 37.16 0.27 -1.91 16 2 C -0.05 -0.96 0.86 -153.40 -0.13 -1.09 16 3 C -0.14 -3.02 7.21 37.16 0.27 -2.75 16 4 C 0.05 1.14 2.41 -90.11 -0.22 0.93 16 5 H 0.07 1.80 7.01 -51.93 -0.36 1.44 16 6 C -0.50 -12.90 6.10 -34.44 -0.21 -13.11 16 7 H 0.05 1.39 7.70 -52.48 -0.40 0.99 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -24.86 12.79 55.43 0.71 -24.15 16 10 Si 0.88 20.71 29.54 -169.99 -5.02 15.68 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C -0.12 -2.39 6.32 -24.74 -0.16 -2.55 16 15 C -0.12 -2.13 6.31 -25.08 -0.16 -2.29 16 16 C -0.08 -1.52 3.06 -90.65 -0.28 -1.80 16 17 H 0.09 1.49 7.67 -51.93 -0.40 1.09 16 18 C 0.49 8.92 5.19 36.01 0.19 9.11 16 19 O -0.52 -10.76 15.67 -18.75 -0.29 -11.05 16 20 O -0.52 -7.68 13.01 -39.25 -0.51 -8.19 16 21 H 0.07 1.51 7.28 -51.93 -0.38 1.13 16 22 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 23 H 0.05 0.92 7.92 -51.93 -0.41 0.50 16 24 H 0.05 1.12 6.92 -51.93 -0.36 0.77 16 25 H 0.03 0.56 7.21 -51.93 -0.37 0.19 16 26 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.49 6.87 -51.92 -0.36 1.13 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.98 9.10 45.56 0.41 4.40 16 LS Contribution 259.05 15.07 3.90 3.90 Total: -1.00 -28.96 259.05 -5.61 -34.57 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.87 Total: 3.04 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.53 Total: -13.82 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.80 Total: -19.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.96 -5.61 -34.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238203954.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.074 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds