Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 110.05618 * 2 1 4 4 C 1.54268 * 110.03002 * 121.41531 * 2 1 3 5 5 H 1.08996 * 110.60186 * 214.40960 * 4 2 1 6 6 C 1.50705 * 110.48619 * 336.99890 * 4 2 1 7 7 H 1.08003 * 119.99939 * 79.96457 * 6 4 2 8 8 C 1.37873 * 119.99905 * 259.97107 * 6 4 2 9 9 N 1.31519 * 120.00290 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 120.00020 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47460 * 59.99811 * 10 8 6 12 12 H 1.48506 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47047 * 299.99285 * 10 8 6 14 14 C 1.54891 * 104.19739 * 95.67342 * 4 2 1 15 15 C 1.54888 * 102.74632 * 37.94167 * 14 4 2 16 16 C 1.53871 * 110.03365 * 238.57773 * 2 1 3 17 17 H 1.08996 * 110.03525 * 0.02562 * 16 2 1 18 18 C 1.50709 * 110.02841 * 121.43342 * 16 2 1 19 19 O 1.20828 * 119.99689 * 87.66059 * 18 16 2 20 20 O 1.34228 * 120.00072 * 267.66048 * 18 16 2 21 21 H 1.09003 * 109.47558 * 303.83387 * 1 2 3 22 22 H 1.09011 * 109.47114 * 63.83174 * 1 2 3 23 23 H 1.09003 * 109.47574 * 183.82578 * 1 2 3 24 24 H 1.09004 * 109.47099 * 179.08970 * 3 2 1 25 25 H 1.08998 * 109.47239 * 299.09112 * 3 2 1 26 26 H 1.09004 * 109.46874 * 59.09652 * 3 2 1 27 27 H 0.96996 * 120.00527 * 180.02562 * 9 8 6 28 28 H 1.09001 * 110.75377 * 279.62982 * 14 4 2 29 29 H 1.08994 * 110.75571 * 156.25693 * 14 4 2 30 30 H 1.09008 * 110.48204 * 80.73496 * 15 14 4 31 31 H 1.09000 * 110.48679 * 203.37732 * 15 14 4 32 32 H 0.96695 * 117.00079 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0583 -0.7555 1.2369 5 1 2.9805 -0.3010 1.5989 6 6 1.0181 -0.7750 2.3272 7 1 0.2056 -1.4853 2.2857 8 6 1.1036 0.1141 3.3775 9 7 2.0932 0.9789 3.4283 10 14 -0.1854 0.0894 4.7293 11 1 -0.1887 -1.2424 5.3861 12 1 0.1314 1.1357 5.7345 13 1 -1.5234 0.3553 4.1424 14 6 2.3279 -2.1902 0.7192 15 6 2.8873 -1.9407 -0.7034 16 6 2.0571 -0.7537 -1.2336 17 1 1.2230 -1.1190 -1.8326 18 6 2.9276 0.1564 -2.0614 19 8 4.1081 0.2469 -1.8203 20 8 2.3916 0.8664 -3.0665 21 1 -0.3634 0.5722 0.8536 22 1 -0.3634 0.4533 -0.9224 23 1 -0.3634 -1.0254 0.0686 24 1 3.1445 1.4261 0.0163 25 1 1.7099 1.9499 -0.8980 26 1 1.6834 1.9595 0.8818 27 1 2.1535 1.6041 4.1674 28 1 1.4029 -2.7651 0.6752 29 1 3.0673 -2.6931 1.3424 30 1 3.9440 -1.6767 -0.6569 31 1 2.7401 -2.8198 -1.3308 32 1 2.9897 1.4359 -3.5695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238203954.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = -135.490773 kcal Electronic energy + Delta-G solvation = -15124.873554 eV Core-core repulsion = 12662.559462 eV Total energy + Delta-G solvation = -2462.314092 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.74155 -39.22341 -36.97533 -34.53132 -32.89086 -30.73712 -28.05224 -27.06420 -24.79317 -23.41162 -21.01529 -19.62599 -18.99238 -18.10503 -17.29515 -16.71846 -16.52655 -15.47275 -15.23059 -14.36616 -14.13775 -13.98220 -13.66824 -13.54916 -12.85175 -12.81432 -12.59804 -12.50115 -12.36336 -12.18032 -12.02742 -11.59086 -11.34640 -11.24789 -11.12522 -10.81793 -10.68829 -10.37724 -8.02530 -6.07511 1.30816 1.45324 1.46136 1.52449 2.26058 2.48783 3.25355 3.81703 3.87173 4.15796 4.48680 4.56416 4.61641 4.73529 4.78032 4.83435 4.94392 5.00961 5.16156 5.21789 5.27956 5.40195 5.50392 5.62053 5.69101 5.76250 5.78884 5.91822 6.01518 6.49397 7.05301 7.11113 7.55538 9.05927 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044956 B = 0.010338 C = 0.009897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.682365 B = 2707.873094 C = 2828.356954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.047 4.047 3 C -0.126 4.126 4 C 0.037 3.963 5 H 0.017 0.983 6 C -0.500 4.500 7 H 0.059 0.941 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.941 3.059 11 H -0.273 1.273 12 H -0.294 1.294 13 H -0.268 1.268 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.081 4.081 17 H 0.122 0.878 18 C 0.498 3.502 19 O -0.554 6.554 20 O -0.510 6.510 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.256 0.744 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -2.442 -10.590 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.047 4.047 3 C -0.183 4.183 4 C 0.018 3.982 5 H 0.036 0.964 6 C -0.538 4.538 7 H 0.077 0.923 8 C -0.184 4.184 9 N -0.564 5.564 10 Si 0.768 3.232 11 H -0.198 1.198 12 H -0.220 1.220 13 H -0.193 1.193 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.101 4.101 17 H 0.140 0.860 18 C 0.343 3.657 19 O -0.445 6.445 20 O -0.323 6.323 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.488 -2.516 -10.199 10.795 hybrid contribution 0.189 0.840 0.838 1.202 sum -2.299 -1.677 -9.360 9.783 Atomic orbital electron populations 1.21551 0.93213 1.01433 0.99698 1.21249 0.96493 0.93943 0.93054 1.21821 0.98812 0.97256 1.00430 1.19710 0.95673 0.91235 0.91534 0.96424 1.21288 1.09932 1.16522 1.06063 0.92304 1.25664 0.97087 0.95632 1.00019 1.70081 1.32518 1.21381 1.32401 0.85871 0.80372 0.77440 0.79522 1.19842 1.22035 1.19328 1.22531 0.99662 0.98653 0.94220 1.22382 0.98811 0.96137 0.97313 1.21992 0.98159 0.94575 0.95328 0.86046 1.23585 0.86863 0.77979 0.77287 1.90655 1.19572 1.65433 1.68796 1.84544 1.47284 1.56340 1.44173 0.94093 0.92995 0.92503 0.95473 0.92806 0.93682 0.93530 0.91269 0.93375 0.92341 0.88973 0.71812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.84 7.19 71.98 0.52 -3.33 16 2 C -0.05 -1.91 0.86 -51.46 -0.04 -1.96 16 3 C -0.13 -5.49 7.21 71.98 0.52 -4.97 16 4 C 0.04 1.79 2.41 -10.46 -0.03 1.77 16 5 H 0.02 1.00 7.01 -2.39 -0.02 0.98 16 6 C -0.50 -25.80 6.10 25.60 0.16 -25.65 16 7 H 0.06 2.93 7.70 -2.91 -0.02 2.91 16 8 C 0.01 0.76 5.46 84.65 0.46 1.22 16 9 N -0.92 -53.65 12.79 21.45 0.27 -53.37 16 10 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 C -0.11 -4.48 6.32 31.89 0.20 -4.28 16 15 C -0.11 -3.72 6.31 31.67 0.20 -3.52 16 16 C -0.08 -2.76 3.06 -10.82 -0.03 -2.80 16 17 H 0.12 3.40 7.67 -2.39 -0.02 3.39 16 18 C 0.50 16.77 5.19 71.24 0.37 17.13 16 19 O -0.55 -22.19 15.67 21.96 0.34 -21.84 16 20 O -0.51 -13.07 13.01 -51.40 -0.67 -13.74 16 21 H 0.04 1.75 7.28 -2.39 -0.02 1.73 16 22 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.06 2.02 7.92 -2.39 -0.02 2.00 16 24 H 0.03 1.26 6.92 -2.38 -0.02 1.24 16 25 H 0.05 2.01 7.21 -2.39 -0.02 1.99 16 26 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 2.22 6.87 -2.38 -0.02 2.20 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.42 6.89 9.10 -74.06 -0.67 6.21 16 Total: -1.00 -63.46 259.05 4.73 -58.73 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.44 Total: 11.72 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 2.32 Total: -26.37 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.27 Total: -53.37 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.32 Total: -35.58 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.46 4.73 -58.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238203954.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.766 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds