Wall clock time and date at job start Mon Mar 30 2020 02:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 110.01760 * 2 1 4 4 C 1.53876 * 110.03335 * 238.56261 * 2 1 3 5 5 H 1.08999 * 110.03377 * 121.42856 * 4 2 1 6 6 C 1.50709 * 110.02720 * 359.97438 * 4 2 1 7 7 H 1.07990 * 120.00022 * 359.97438 * 6 4 2 8 8 C 1.37884 * 119.99652 * 180.02562 * 6 4 2 9 9 N 1.31511 * 119.99553 * 179.97438 * 8 6 4 10 10 Si 1.86801 * 120.00125 * 359.97438 * 8 6 4 11 11 H 1.48498 * 109.47015 * 90.00274 * 10 8 6 12 12 H 1.48496 * 109.47178 * 210.00463 * 10 8 6 13 13 H 1.48502 * 109.47092 * 330.00427 * 10 8 6 14 14 C 1.54269 * 106.60120 * 240.71630 * 4 2 1 15 15 C 1.54889 * 104.19345 * 336.38702 * 14 4 2 16 16 C 1.54264 * 110.03411 * 121.39440 * 2 1 3 17 17 H 1.08998 * 110.48815 * 24.08524 * 16 2 1 18 18 C 1.50698 * 110.48683 * 261.56645 * 16 2 1 19 19 O 1.20823 * 120.00795 * 265.38257 * 18 16 2 20 20 O 1.34229 * 119.99577 * 85.38148 * 18 16 2 21 21 H 1.09006 * 109.46632 * 300.05932 * 1 2 3 22 22 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47303 * 60.05381 * 1 2 3 24 24 H 1.08998 * 109.47027 * 54.44052 * 3 2 1 25 25 H 1.09003 * 109.47028 * 174.43692 * 3 2 1 26 26 H 1.08993 * 109.47463 * 294.43546 * 3 2 1 27 27 H 0.97004 * 119.99609 * 179.97438 * 9 8 6 28 28 H 1.08994 * 110.48666 * 217.70894 * 14 4 2 29 29 H 1.09005 * 110.59916 * 95.11786 * 14 4 2 30 30 H 1.09000 * 110.75643 * 279.63195 * 15 14 4 31 31 H 1.08997 * 110.91798 * 156.32963 * 15 14 4 32 32 H 0.96701 * 117.00808 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7540 -1.2334 5 1 2.6867 -0.0960 -1.8324 6 6 0.9036 -1.2604 -2.0607 7 1 -0.1115 -1.0690 -1.7461 8 6 1.1446 -1.9691 -3.2187 9 7 0.1380 -2.4114 -3.9403 10 14 2.9006 -2.3008 -3.7625 11 1 3.3667 -3.5828 -3.1757 12 1 2.9521 -2.3867 -5.2441 13 1 3.7790 -1.1964 -3.2999 14 6 2.8875 -1.9410 -0.7029 15 6 3.3137 -1.5005 0.7196 16 6 2.0584 -0.7550 1.2371 17 1 1.3134 -1.4637 1.5986 18 6 2.4336 0.2158 2.3270 19 8 3.5762 0.5943 2.4320 20 8 1.4983 0.6601 3.1811 21 1 -0.3633 0.5148 0.8895 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5130 -0.8904 24 1 1.6166 1.9835 0.8360 25 1 3.1391 1.4289 0.0996 26 1 1.7787 1.9245 -0.9355 27 1 0.3075 -2.9097 -4.7552 28 1 3.7637 -2.1043 -1.3302 29 1 2.2790 -2.8442 -0.6562 30 1 4.1710 -0.8288 0.6753 31 1 3.5345 -2.3655 1.3450 32 1 1.7867 1.2814 3.8638 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238232999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:56 Heat of formation + Delta-G solvation = -104.873689 kcal Electronic energy + Delta-G solvation = -15094.638190 eV Core-core repulsion = 12633.651754 eV Total energy + Delta-G solvation = -2460.986436 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46552 -38.02338 -35.82499 -32.55354 -31.62576 -29.51639 -26.93859 -25.32946 -22.84126 -22.19495 -19.77293 -18.13629 -17.66725 -16.67444 -16.03368 -15.40913 -14.64827 -13.88617 -13.69027 -13.35288 -12.72417 -12.53606 -12.41723 -12.03078 -11.48328 -11.37429 -11.25902 -10.89977 -10.68739 -10.58345 -10.17782 -10.10521 -9.87867 -9.85773 -9.59100 -9.31884 -8.71658 -8.52155 -6.03778 -4.02775 2.51045 3.30091 3.35988 3.41142 3.41953 4.44860 5.03526 5.11113 5.32421 5.42461 5.69436 5.85943 5.88505 6.05999 6.15505 6.19186 6.28610 6.34796 6.45497 6.55138 6.64617 6.71181 6.79863 6.95214 7.00451 7.06368 7.22554 7.50118 7.79725 8.17529 8.55110 9.00863 9.59183 11.07734 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.045486 B = 0.011014 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.421414 B = 2541.711060 C = 2833.844143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.036 4.036 3 C -0.147 4.147 4 C 0.020 3.980 5 H 0.034 0.966 6 C -0.518 4.518 7 H 0.095 0.905 8 C 0.072 3.928 9 N -0.902 5.902 10 Si 0.872 3.128 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.265 1.265 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.080 4.080 17 H 0.104 0.896 18 C 0.492 3.508 19 O -0.525 6.525 20 O -0.518 6.518 21 H 0.029 0.971 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 4.017 10.380 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.037 4.037 3 C -0.204 4.204 4 C 0.001 3.999 5 H 0.052 0.948 6 C -0.556 4.556 7 H 0.113 0.887 8 C -0.129 4.129 9 N -0.541 5.541 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.222 1.222 13 H -0.190 1.190 14 C -0.168 4.168 15 C -0.147 4.147 16 C -0.099 4.099 17 H 0.122 0.878 18 C 0.336 3.664 19 O -0.414 6.414 20 O -0.329 6.329 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.433 3.741 9.925 11.148 hybrid contribution 1.195 0.117 0.075 1.203 sum 4.628 3.858 10.000 11.675 Atomic orbital electron populations 1.21889 0.93755 1.02324 0.99830 1.20984 0.96301 0.93719 0.92653 1.22078 1.00661 0.96254 1.01416 1.19828 0.95638 0.92257 0.92134 0.94780 1.21505 0.94017 1.33916 1.06123 0.88722 1.25001 0.96261 0.95335 0.96321 1.69892 1.30592 1.37882 1.15719 0.87041 0.86502 0.79268 0.77122 1.20386 1.22237 1.18999 1.22879 0.99210 1.01325 0.93404 1.22503 0.95721 0.98792 0.97664 1.22156 1.00715 0.95468 0.91578 0.87756 1.23748 0.82585 0.79578 0.80480 1.90647 1.21812 1.57161 1.71772 1.84636 1.44163 1.60748 1.43314 0.95201 0.91440 0.91601 0.94016 0.92715 0.91767 0.92792 0.93300 0.90862 0.90681 0.92149 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 6.85 37.16 0.25 -2.02 16 2 C -0.04 -0.69 0.86 -153.39 -0.13 -0.82 16 3 C -0.15 -2.59 7.16 37.16 0.27 -2.33 16 4 C 0.02 0.45 2.04 -90.65 -0.19 0.27 16 5 H 0.03 0.80 6.66 -51.93 -0.35 0.46 16 6 C -0.52 -13.55 8.08 -34.43 -0.28 -13.83 16 7 H 0.10 2.59 4.90 -52.49 -0.26 2.33 16 8 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 9 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 10 Si 0.87 21.29 24.70 -169.99 -4.20 17.09 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.27 -6.26 6.36 56.52 0.36 -5.90 16 14 C -0.13 -2.70 4.69 -25.07 -0.12 -2.81 16 15 C -0.11 -1.93 6.14 -24.73 -0.15 -2.08 16 16 C -0.08 -1.38 2.82 -90.11 -0.25 -1.63 16 17 H 0.10 1.70 7.85 -51.93 -0.41 1.29 16 18 C 0.49 7.91 5.46 36.00 0.20 8.11 16 19 O -0.53 -9.49 15.91 -18.75 -0.30 -9.79 16 20 O -0.52 -6.75 13.42 -39.26 -0.53 -7.27 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 1.34 7.00 -51.93 -0.36 0.98 16 23 H 0.07 1.32 7.20 -51.93 -0.37 0.95 16 24 H 0.04 0.67 7.37 -51.93 -0.38 0.29 16 25 H 0.05 0.98 7.50 -51.93 -0.39 0.60 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 1.02 5.85 -51.93 -0.30 0.71 16 29 H 0.07 1.56 7.85 -51.93 -0.41 1.16 16 30 H 0.07 1.36 7.26 -51.93 -0.38 0.98 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.40 3.30 9.10 45.56 0.41 3.72 16 LS Contribution 249.41 15.07 3.76 3.76 Total: -1.00 -30.10 249.41 -4.63 -34.73 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.64 Total: 2.74 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.50 Total: -15.25 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.77 Total: -26.01 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.83 Total: -17.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.20 Total: 17.09 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.10 -4.63 -34.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238232999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.139 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds