Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.05360 * 2 1 4 4 C 1.54270 * 110.03212 * 238.58536 * 2 1 3 5 5 H 1.09004 * 110.48570 * 145.64218 * 4 2 1 6 6 C 1.50707 * 110.48479 * 23.00475 * 4 2 1 7 7 H 1.07997 * 119.99849 * 280.06265 * 6 4 2 8 8 C 1.37871 * 120.00230 * 100.06238 * 6 4 2 9 9 N 1.31519 * 119.99718 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00432 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46784 * 89.99727 * 10 8 6 12 12 H 1.48492 * 109.47228 * 210.00057 * 10 8 6 13 13 H 1.48503 * 109.46916 * 330.00226 * 10 8 6 14 14 C 1.54890 * 104.19491 * 264.32679 * 4 2 1 15 15 C 1.54888 * 102.74708 * 322.05681 * 14 4 2 16 16 C 1.53868 * 110.03333 * 121.42048 * 2 1 3 17 17 C 1.53007 * 110.07291 * 359.97317 * 16 2 1 18 18 C 1.50705 * 110.03147 * 238.57102 * 16 2 1 19 19 O 1.20823 * 120.00054 * 1.37557 * 18 16 2 20 20 O 1.34234 * 119.99863 * 181.38027 * 18 16 2 21 21 H 1.08998 * 109.47122 * 295.87045 * 1 2 3 22 22 H 1.09003 * 109.47068 * 55.87165 * 1 2 3 23 23 H 1.08997 * 109.47190 * 175.87163 * 1 2 3 24 24 H 0.97007 * 119.99677 * 179.97438 * 9 8 6 25 25 H 1.09001 * 110.74949 * 203.74031 * 14 4 2 26 26 H 1.08996 * 110.75595 * 80.37589 * 14 4 2 27 27 H 1.08997 * 110.48232 * 156.62686 * 15 14 4 28 28 H 1.09005 * 110.48266 * 279.26692 * 15 14 4 29 29 H 1.09002 * 109.47232 * 178.64255 * 17 16 2 30 30 H 1.08998 * 109.47441 * 298.64979 * 17 16 2 31 31 H 1.09007 * 109.46624 * 58.65117 * 17 16 2 32 32 H 0.96699 * 116.99378 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 1 2.9811 -0.3000 -1.5967 6 6 1.0183 -0.7749 -2.3273 7 1 0.2056 -1.4849 -2.2856 8 6 1.1041 0.1137 -3.3779 9 7 2.0936 0.9787 -3.4283 10 14 -0.1848 0.0892 -4.7298 11 1 -1.2966 1.0057 -4.3703 12 1 0.4291 0.5327 -6.0071 13 1 -0.7115 -1.2904 -4.8865 14 6 2.3280 -2.1902 -0.7192 15 6 2.8874 -1.9407 0.7034 16 6 2.0571 -0.7536 1.2336 17 6 0.8869 -1.2669 2.0751 18 6 2.9276 0.1564 2.0615 19 8 3.0953 1.3042 1.7233 20 8 3.5167 -0.3082 3.1745 21 1 -0.3633 0.4484 0.9247 22 1 -0.3633 0.5766 -0.8507 23 1 -0.3633 -1.0250 -0.0740 24 1 2.1542 1.6036 -4.1678 25 1 3.0675 -2.6930 -1.3425 26 1 1.4031 -2.7651 -0.6753 27 1 2.7402 -2.8198 1.3307 28 1 3.9440 -1.6766 0.6569 29 1 1.2708 -1.8193 2.9327 30 1 0.2919 -0.4226 2.4234 31 1 0.2642 -1.9246 1.4685 32 1 4.0660 0.3127 3.6723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238456975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = -112.680996 kcal Electronic energy + Delta-G solvation = -15002.458868 eV Core-core repulsion = 12541.133882 eV Total energy + Delta-G solvation = -2461.324986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32367 -37.73998 -35.67320 -32.88702 -30.61947 -29.98840 -25.75532 -25.22357 -23.44477 -22.05381 -19.47965 -17.84435 -17.42139 -16.45248 -15.94022 -15.19236 -14.49177 -14.10054 -13.80276 -13.07512 -12.49755 -12.20080 -12.17527 -11.80241 -11.50870 -11.18104 -11.03265 -10.82318 -10.75165 -10.50197 -10.39016 -9.95860 -9.76516 -9.63032 -9.36107 -8.95244 -8.69908 -8.37804 -5.96953 -3.97770 2.68208 3.31960 3.39701 3.41826 3.47734 4.46287 5.14180 5.25336 5.39873 5.43820 5.83199 5.96091 6.05693 6.11759 6.36222 6.41673 6.43597 6.48362 6.61246 6.77115 6.82992 6.86888 6.94934 7.07906 7.39214 7.48682 7.70025 7.83942 8.01173 8.32954 8.49993 9.09113 9.63393 11.12620 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.009698 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.782867 B = 2886.615190 C = 2972.632298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 H 0.078 0.922 4 C 0.042 3.958 5 H 0.060 0.940 6 C -0.500 4.500 7 H 0.055 0.945 8 C 0.062 3.938 9 N -0.891 5.891 10 Si 0.886 3.114 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.054 4.054 17 C -0.133 4.133 18 C 0.484 3.516 19 O -0.511 6.511 20 O -0.521 6.521 21 H 0.021 0.979 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.260 0.740 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -4.372 10.044 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 H 0.096 0.904 4 C 0.024 3.976 5 H 0.078 0.922 6 C -0.538 4.538 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.714 3.286 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.055 4.055 17 C -0.190 4.190 18 C 0.327 3.673 19 O -0.397 6.397 20 O -0.332 6.332 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.146 -4.174 9.599 10.468 hybrid contribution -0.212 0.613 -0.375 0.749 sum -0.358 -3.561 9.224 9.894 Atomic orbital electron populations 1.21682 0.95468 1.00820 0.99008 1.22115 0.95789 1.00184 0.91965 0.90403 1.19702 0.98030 0.88832 0.91060 0.92168 1.20997 1.09798 1.17336 1.05656 0.92638 1.25013 0.95449 0.95600 0.97883 1.69947 1.30755 1.20359 1.31835 0.86696 0.81918 0.78271 0.81728 1.20713 1.21355 1.19904 1.22661 0.99082 1.01104 0.92698 1.22406 0.98260 0.95246 0.98596 1.21431 0.93864 0.95207 0.95007 1.21924 0.97020 1.01181 0.98848 1.23971 0.77533 0.87657 0.78181 1.90677 1.59677 1.20113 1.69277 1.84602 1.61802 1.48499 1.38335 0.95986 0.91767 0.93382 0.92995 0.92838 0.92520 0.91959 0.92340 0.92827 0.92408 0.90565 0.74476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 6.91 37.16 0.26 -2.07 16 2 C -0.08 -1.81 3.02 -89.50 -0.27 -2.08 16 3 H 0.08 1.98 6.40 -51.93 -0.33 1.65 16 4 C 0.04 1.04 2.88 -90.11 -0.26 0.78 16 5 H 0.06 1.69 7.31 -51.93 -0.38 1.31 16 6 C -0.50 -13.21 6.11 -34.44 -0.21 -13.42 16 7 H 0.06 1.44 7.69 -52.49 -0.40 1.03 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -26.10 12.79 55.43 0.71 -25.39 16 10 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 C -0.12 -2.38 6.32 -24.74 -0.16 -2.53 16 15 C -0.11 -1.88 5.87 -25.08 -0.15 -2.03 16 16 C -0.05 -0.99 0.88 -154.54 -0.14 -1.12 16 17 C -0.13 -2.03 7.12 37.16 0.26 -1.76 16 18 C 0.48 8.81 6.80 36.01 0.25 9.06 16 19 O -0.51 -11.04 15.97 -18.75 -0.30 -11.34 16 20 O -0.52 -7.29 13.33 -39.27 -0.52 -7.82 16 21 H 0.02 0.39 6.61 -51.93 -0.34 0.05 16 22 H 0.06 1.47 7.30 -51.93 -0.38 1.09 16 23 H 0.05 0.93 6.63 -51.93 -0.34 0.59 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 27 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 28 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.86 6.76 -51.93 -0.35 0.51 16 31 H 0.08 1.14 6.73 -51.93 -0.35 0.79 16 32 H 0.40 3.74 9.10 45.56 0.41 4.15 16 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -30.53 257.17 -5.45 -35.98 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.68 Total: 2.11 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.51 Total: -13.56 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.71 Total: -25.39 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.82 Total: -19.16 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.53 -5.45 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238456975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.705 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds