Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.05360 * 2 1 4 4 C 1.54270 * 110.03212 * 238.58536 * 2 1 3 5 5 H 1.09004 * 110.48570 * 145.64218 * 4 2 1 6 6 C 1.50707 * 110.48479 * 23.00475 * 4 2 1 7 7 H 1.07997 * 119.99849 * 280.06265 * 6 4 2 8 8 C 1.37871 * 120.00230 * 100.06238 * 6 4 2 9 9 N 1.31519 * 119.99718 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00432 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46784 * 89.99727 * 10 8 6 12 12 H 1.48492 * 109.47228 * 210.00057 * 10 8 6 13 13 H 1.48503 * 109.46916 * 330.00226 * 10 8 6 14 14 C 1.54890 * 104.19491 * 264.32679 * 4 2 1 15 15 C 1.54888 * 102.74708 * 322.05681 * 14 4 2 16 16 C 1.53868 * 110.03333 * 121.42048 * 2 1 3 17 17 C 1.53007 * 110.07291 * 359.97317 * 16 2 1 18 18 C 1.50705 * 110.03147 * 238.57102 * 16 2 1 19 19 O 1.20823 * 120.00054 * 1.37557 * 18 16 2 20 20 O 1.34234 * 119.99863 * 181.38027 * 18 16 2 21 21 H 1.08998 * 109.47122 * 295.87045 * 1 2 3 22 22 H 1.09003 * 109.47068 * 55.87165 * 1 2 3 23 23 H 1.08997 * 109.47190 * 175.87163 * 1 2 3 24 24 H 0.97007 * 119.99677 * 179.97438 * 9 8 6 25 25 H 1.09001 * 110.74949 * 203.74031 * 14 4 2 26 26 H 1.08996 * 110.75595 * 80.37589 * 14 4 2 27 27 H 1.08997 * 110.48232 * 156.62686 * 15 14 4 28 28 H 1.09005 * 110.48266 * 279.26692 * 15 14 4 29 29 H 1.09002 * 109.47232 * 178.64255 * 17 16 2 30 30 H 1.08998 * 109.47441 * 298.64979 * 17 16 2 31 31 H 1.09007 * 109.46624 * 58.65117 * 17 16 2 32 32 H 0.96699 * 116.99378 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 1 2.9811 -0.3000 -1.5967 6 6 1.0183 -0.7749 -2.3273 7 1 0.2056 -1.4849 -2.2856 8 6 1.1041 0.1137 -3.3779 9 7 2.0936 0.9787 -3.4283 10 14 -0.1848 0.0892 -4.7298 11 1 -1.2966 1.0057 -4.3703 12 1 0.4291 0.5327 -6.0071 13 1 -0.7115 -1.2904 -4.8865 14 6 2.3280 -2.1902 -0.7192 15 6 2.8874 -1.9407 0.7034 16 6 2.0571 -0.7536 1.2336 17 6 0.8869 -1.2669 2.0751 18 6 2.9276 0.1564 2.0615 19 8 3.0953 1.3042 1.7233 20 8 3.5167 -0.3082 3.1745 21 1 -0.3633 0.4484 0.9247 22 1 -0.3633 0.5766 -0.8507 23 1 -0.3633 -1.0250 -0.0740 24 1 2.1542 1.6036 -4.1678 25 1 3.0675 -2.6930 -1.3425 26 1 1.4031 -2.7651 -0.6753 27 1 2.7402 -2.8198 1.3307 28 1 3.9440 -1.6766 0.6569 29 1 1.2708 -1.8193 2.9327 30 1 0.2919 -0.4226 2.4234 31 1 0.2642 -1.9246 1.4685 32 1 4.0660 0.3127 3.6723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238456975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -132.609063 kcal Electronic energy + Delta-G solvation = -15003.323014 eV Core-core repulsion = 12541.133882 eV Total energy + Delta-G solvation = -2462.189132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.78504 -39.28719 -37.03871 -34.84367 -32.22475 -31.70404 -27.50946 -26.74128 -25.21476 -23.54163 -21.12043 -19.50828 -18.80123 -18.16085 -17.73527 -16.67190 -16.37637 -15.65380 -15.25960 -14.68186 -14.20035 -13.71725 -13.61785 -13.48293 -13.19731 -12.77823 -12.57179 -12.43279 -12.34951 -12.29462 -12.19319 -11.42346 -11.34931 -11.20695 -11.12520 -10.82331 -10.63468 -10.44378 -8.07227 -6.12817 1.26291 1.42097 1.42931 1.52745 2.18438 2.46086 3.22557 3.70202 3.88233 4.04734 4.48958 4.60846 4.71358 4.73234 4.75379 4.88867 4.90665 5.04216 5.18363 5.22587 5.26327 5.33544 5.46442 5.60508 5.63356 5.71965 5.78087 5.91897 6.00045 6.45699 7.01928 7.06515 7.51311 9.03121 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.009698 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.782867 B = 2886.615190 C = 2972.632298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.081 4.081 3 H 0.032 0.968 4 C 0.029 3.971 5 H 0.009 0.991 6 C -0.496 4.496 7 H 0.063 0.937 8 C 0.003 3.997 9 N -0.936 5.936 10 Si 0.949 3.051 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.260 1.260 14 C -0.110 4.110 15 C -0.097 4.097 16 C -0.055 4.055 17 C -0.128 4.128 18 C 0.490 3.510 19 O -0.556 6.556 20 O -0.502 6.502 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.064 0.936 24 H 0.256 0.744 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -6.479 11.844 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 H 0.051 0.949 4 C 0.010 3.990 5 H 0.027 0.973 6 C -0.534 4.534 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.577 5.577 10 Si 0.775 3.225 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.184 1.184 14 C -0.148 4.148 15 C -0.135 4.135 16 C -0.056 4.056 17 C -0.185 4.185 18 C 0.334 3.666 19 O -0.446 6.446 20 O -0.314 6.314 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.222 -6.315 11.435 13.120 hybrid contribution 0.193 1.259 -0.855 1.534 sum -1.029 -5.056 10.580 11.771 Atomic orbital electron populations 1.21584 0.94171 1.01461 0.98888 1.21877 0.96861 0.97924 0.93365 0.94944 1.19678 0.95488 0.91899 0.91894 0.97252 1.21371 1.09846 1.16414 1.05817 0.91858 1.25820 0.97395 0.95603 1.00610 1.70120 1.33109 1.21749 1.32709 0.85693 0.79363 0.78822 0.78655 1.20432 1.21736 1.18362 1.22526 0.99965 0.97984 0.94321 1.22370 0.97573 0.96304 0.97241 1.21327 0.95431 0.94796 0.94037 1.21929 0.95655 1.01603 0.99284 1.23876 0.77151 0.86755 0.78774 1.90682 1.61293 1.22047 1.70624 1.84512 1.61494 1.48653 1.36785 0.93468 0.95066 0.91663 0.93469 0.93030 0.91022 0.87919 0.92908 0.89948 0.92218 0.89782 0.71741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.21 6.91 71.98 0.50 -3.71 16 2 C -0.08 -3.63 3.02 -10.07 -0.03 -3.67 16 3 H 0.03 1.73 6.40 -2.39 -0.02 1.72 16 4 C 0.03 1.46 2.88 -10.46 -0.03 1.43 16 5 H 0.01 0.54 7.31 -2.38 -0.02 0.52 16 6 C -0.50 -26.50 6.11 25.60 0.16 -26.35 16 7 H 0.06 3.22 7.69 -2.91 -0.02 3.19 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.94 -57.51 12.79 21.45 0.27 -57.23 16 10 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 14 C -0.11 -4.28 6.32 31.89 0.20 -4.08 16 15 C -0.10 -3.13 5.87 31.67 0.19 -2.95 16 16 C -0.05 -1.89 0.88 -52.20 -0.05 -1.93 16 17 C -0.13 -3.36 7.12 71.98 0.51 -2.84 16 18 C 0.49 17.06 6.80 71.24 0.48 17.55 16 19 O -0.56 -24.31 15.97 21.97 0.35 -23.96 16 20 O -0.50 -12.30 13.33 -51.46 -0.69 -12.99 16 21 H 0.05 1.64 6.61 -2.39 -0.02 1.62 16 22 H 0.03 1.43 7.30 -2.39 -0.02 1.41 16 23 H 0.06 2.38 6.63 -2.39 -0.02 2.36 16 24 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 27 H 0.10 2.54 7.84 -2.39 -0.02 2.52 16 28 H 0.05 1.75 7.85 -2.38 -0.02 1.73 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.55 6.76 -2.39 -0.02 1.53 16 31 H 0.08 2.10 6.73 -2.38 -0.02 2.08 16 32 H 0.42 6.51 9.10 -74.06 -0.67 5.83 16 Total: -1.00 -69.22 257.17 4.80 -64.42 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.44 Total: 9.53 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 2.39 Total: -25.94 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.27 Total: -57.23 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.34 Total: -36.94 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.22 4.80 -64.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238456975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.194 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds