Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86793 * 119.99761 * 2 1 4 4 H 1.48505 * 109.47343 * 274.96244 * 3 2 1 5 5 H 1.48506 * 109.47447 * 34.96251 * 3 2 1 6 6 H 1.48498 * 109.47381 * 154.96342 * 3 2 1 7 7 C 1.40048 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99935 * 187.46005 * 7 2 1 9 9 C 1.46379 * 119.99936 * 7.46527 * 7 2 1 10 10 O 1.21693 * 119.99742 * 356.22990 * 9 7 2 11 11 N 1.34773 * 119.99959 * 176.22970 * 9 7 2 12 12 C 1.46928 * 120.62974 * 5.15115 * 11 9 7 13 13 C 1.53194 * 108.77259 * 126.39282 * 12 11 9 14 14 C 1.53041 * 109.31077 * 54.63540 * 13 12 11 15 15 C 1.53035 * 109.54170 * 298.63414 * 14 13 12 16 16 C 1.46928 * 120.62932 * 185.15844 * 11 9 7 17 17 H 1.08993 * 109.70325 * 113.75142 * 16 11 9 18 18 C 1.53000 * 109.58799 * 353.39058 * 16 11 9 19 19 N 1.46903 * 109.46979 * 179.14423 * 18 16 11 20 20 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.58358 * 6.61175 * 12 11 9 22 22 H 1.08995 * 109.70628 * 246.25013 * 12 11 9 23 23 H 1.08997 * 109.49950 * 294.68759 * 13 12 11 24 24 H 1.08993 * 109.52400 * 174.60172 * 13 12 11 25 25 H 1.09003 * 109.46222 * 178.61350 * 14 13 12 26 26 H 1.09005 * 109.44833 * 58.65205 * 14 13 12 27 27 H 1.08998 * 109.49925 * 301.41309 * 15 14 13 28 28 H 1.09001 * 109.50411 * 181.31827 * 15 14 13 29 29 H 1.08999 * 109.47002 * 299.14991 * 18 16 11 30 30 H 1.09000 * 109.46938 * 59.14895 * 18 16 11 31 31 H 1.00900 * 110.99527 * 183.09368 * 19 18 16 32 32 H 1.00897 * 111.00246 * 307.05322 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3833 2.1070 -1.3949 5 1 1.4945 2.6202 0.8023 6 1 3.5867 1.4123 0.5925 7 6 2.0071 -1.2128 0.0005 8 1 3.0801 -1.2167 0.1220 9 6 1.2845 -2.4752 -0.1636 10 8 0.0695 -2.4764 -0.2317 11 7 1.9649 -3.6362 -0.2393 12 6 3.4211 -3.6643 -0.0464 13 6 3.7547 -4.6910 1.0405 14 6 3.1442 -6.0430 0.6641 15 6 1.6222 -5.9105 0.5757 16 6 1.2644 -4.8976 -0.5165 17 1 1.5730 -5.2835 -1.4880 18 6 -0.2464 -4.6560 -0.5170 19 7 -0.9435 -5.9144 -0.8146 20 1 -0.4850 0.8400 -0.0004 21 1 3.7678 -2.6785 0.2635 22 1 3.9100 -3.9472 -0.9786 23 1 3.3431 -4.3587 1.9935 24 1 4.8365 -4.7917 1.1268 25 1 3.4008 -6.7814 1.4237 26 1 3.5376 -6.3628 -0.3008 27 1 1.2306 -5.5667 1.5330 28 1 1.1862 -6.8790 0.3305 29 1 -0.5564 -4.2917 0.4624 30 1 -0.4955 -3.9144 -1.2760 31 1 -1.9406 -5.7709 -0.8704 32 1 -0.5901 -6.3318 -1.6625 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257861258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = -31.297962 kcal Electronic energy + Delta-G solvation = -14930.030807 eV Core-core repulsion = 12504.527605 eV Total energy + Delta-G solvation = -2425.503202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93874 -35.74074 -34.07462 -32.52980 -31.52011 -29.83075 -26.58142 -24.62298 -23.37107 -21.08825 -20.31348 -18.78424 -16.46480 -15.69302 -15.22364 -14.49896 -14.22738 -13.96240 -13.68975 -13.61863 -12.96656 -12.70104 -12.07568 -11.58655 -11.40961 -11.31533 -11.10384 -11.00767 -10.55482 -10.35500 -10.33414 -10.21590 -9.98282 -9.62333 -8.86889 -8.18448 -7.21185 -7.03702 -6.17438 -4.65804 3.11367 3.19177 3.21966 4.06332 4.46986 4.55773 5.31723 5.36926 5.41300 5.45410 5.70767 5.77020 5.96523 6.01597 6.12510 6.22929 6.39514 6.44138 6.50183 6.61754 6.67383 6.79012 7.04714 7.17689 7.43757 7.60993 7.78885 8.02975 8.16010 8.37422 9.00460 9.43657 10.54677 10.73734 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.010999 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.126116 B = 2545.010564 C = 3220.203441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.557 3.443 10 O -0.572 6.572 11 N -0.638 5.638 12 C 0.123 3.877 13 C -0.136 4.136 14 C -0.117 4.117 15 C -0.118 4.118 16 C 0.158 3.842 17 H 0.040 0.960 18 C 0.076 3.924 19 N -0.865 5.865 20 H 0.268 0.732 21 H 0.092 0.908 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.335 0.665 32 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -7.196 -0.533 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.364 3.636 10 O -0.455 6.455 11 N -0.377 5.377 12 C -0.002 4.002 13 C -0.174 4.174 14 C -0.155 4.155 15 C -0.157 4.157 16 C 0.053 3.947 17 H 0.058 0.942 18 C -0.052 4.052 19 N -0.396 5.396 20 H 0.079 0.921 21 H 0.110 0.890 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.643 -7.285 0.146 8.640 hybrid contribution 0.337 1.229 -0.856 1.535 sum 4.979 -6.057 -0.711 7.873 Atomic orbital electron populations 1.70014 1.07053 1.27271 1.35143 1.25710 0.94571 1.00256 0.92554 0.86405 0.80319 0.81646 0.78687 1.19828 1.20476 1.18854 1.21031 0.94352 0.89609 1.53160 0.90958 1.18205 0.86908 0.82135 0.76374 1.90579 1.13889 1.85309 1.55674 1.48209 1.06148 1.06307 1.77024 1.21403 0.82753 0.99891 0.96109 1.21954 0.99397 0.95929 1.00151 1.21512 0.96540 0.96885 1.00517 1.21852 0.94596 0.99435 0.99829 1.20843 0.92705 0.85555 0.95594 0.94229 1.22480 0.91608 0.87251 1.03894 1.59046 1.08492 1.30433 1.41646 0.92147 0.89024 0.94213 0.91863 0.92240 0.92915 0.92719 0.92246 0.91365 0.89860 0.92194 0.85407 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.86 55.55 0.66 -21.83 16 2 C 0.09 2.44 5.49 -17.36 -0.10 2.34 16 3 Si 0.90 19.90 29.56 -169.99 -5.03 14.88 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -15.08 8.85 -35.63 -0.32 -15.39 16 8 H 0.07 1.84 5.71 -52.49 -0.30 1.54 16 9 C 0.56 15.53 7.54 -12.99 -0.10 15.43 16 10 O -0.57 -17.43 10.44 5.20 0.05 -17.38 16 11 N -0.64 -14.60 2.97 -166.87 -0.50 -15.10 16 12 C 0.12 2.34 6.32 -3.71 -0.02 2.32 16 13 C -0.14 -2.18 6.08 -26.61 -0.16 -2.34 16 14 C -0.12 -1.77 5.88 -26.69 -0.16 -1.93 16 15 C -0.12 -2.07 5.15 -26.61 -0.14 -2.21 16 16 C 0.16 3.20 3.10 -67.60 -0.21 2.99 16 17 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 18 C 0.08 1.64 4.63 -3.82 -0.02 1.62 16 19 N -0.87 -14.63 9.07 -10.37 -0.09 -14.72 16 20 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 21 H 0.09 1.82 5.37 -51.93 -0.28 1.55 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 29 H 0.08 2.08 7.10 -51.93 -0.37 1.71 16 30 H 0.06 1.50 6.37 -51.93 -0.33 1.17 16 31 H 0.33 5.22 9.08 -39.29 -0.36 4.86 16 32 H 0.32 4.84 8.95 -39.29 -0.35 4.48 16 LS Contribution 253.95 15.07 3.83 3.83 Total: -1.00 -31.20 253.95 -6.78 -37.98 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.49 Total: 9.52 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.21 Total: 2.83 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.07 Total: -51.65 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.05 Total: -17.38 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.20 -6.78 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257861258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.680 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds