Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86793 * 119.99761 * 2 1 4 4 H 1.48505 * 109.47343 * 274.96244 * 3 2 1 5 5 H 1.48506 * 109.47447 * 34.96251 * 3 2 1 6 6 H 1.48498 * 109.47381 * 154.96342 * 3 2 1 7 7 C 1.40048 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99935 * 187.46005 * 7 2 1 9 9 C 1.46379 * 119.99936 * 7.46527 * 7 2 1 10 10 O 1.21693 * 119.99742 * 356.22990 * 9 7 2 11 11 N 1.34773 * 119.99959 * 176.22970 * 9 7 2 12 12 C 1.46928 * 120.62974 * 5.15115 * 11 9 7 13 13 C 1.53194 * 108.77259 * 126.39282 * 12 11 9 14 14 C 1.53041 * 109.31077 * 54.63540 * 13 12 11 15 15 C 1.53035 * 109.54170 * 298.63414 * 14 13 12 16 16 C 1.46928 * 120.62932 * 185.15844 * 11 9 7 17 17 H 1.08993 * 109.70325 * 113.75142 * 16 11 9 18 18 C 1.53000 * 109.58799 * 353.39058 * 16 11 9 19 19 N 1.46903 * 109.46979 * 179.14423 * 18 16 11 20 20 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.58358 * 6.61175 * 12 11 9 22 22 H 1.08995 * 109.70628 * 246.25013 * 12 11 9 23 23 H 1.08997 * 109.49950 * 294.68759 * 13 12 11 24 24 H 1.08993 * 109.52400 * 174.60172 * 13 12 11 25 25 H 1.09003 * 109.46222 * 178.61350 * 14 13 12 26 26 H 1.09005 * 109.44833 * 58.65205 * 14 13 12 27 27 H 1.08998 * 109.49925 * 301.41309 * 15 14 13 28 28 H 1.09001 * 109.50411 * 181.31827 * 15 14 13 29 29 H 1.08999 * 109.47002 * 299.14991 * 18 16 11 30 30 H 1.09000 * 109.46938 * 59.14895 * 18 16 11 31 31 H 1.00900 * 110.99527 * 183.09368 * 19 18 16 32 32 H 1.00897 * 111.00246 * 307.05322 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3833 2.1070 -1.3949 5 1 1.4945 2.6202 0.8023 6 1 3.5867 1.4123 0.5925 7 6 2.0071 -1.2128 0.0005 8 1 3.0801 -1.2167 0.1220 9 6 1.2845 -2.4752 -0.1636 10 8 0.0695 -2.4764 -0.2317 11 7 1.9649 -3.6362 -0.2393 12 6 3.4211 -3.6643 -0.0464 13 6 3.7547 -4.6910 1.0405 14 6 3.1442 -6.0430 0.6641 15 6 1.6222 -5.9105 0.5757 16 6 1.2644 -4.8976 -0.5165 17 1 1.5730 -5.2835 -1.4880 18 6 -0.2464 -4.6560 -0.5170 19 7 -0.9435 -5.9144 -0.8146 20 1 -0.4850 0.8400 -0.0004 21 1 3.7678 -2.6785 0.2635 22 1 3.9100 -3.9472 -0.9786 23 1 3.3431 -4.3587 1.9935 24 1 4.8365 -4.7917 1.1268 25 1 3.4008 -6.7814 1.4237 26 1 3.5376 -6.3628 -0.3008 27 1 1.2306 -5.5667 1.5330 28 1 1.1862 -6.8790 0.3305 29 1 -0.5564 -4.2917 0.4624 30 1 -0.4955 -3.9144 -1.2760 31 1 -1.9406 -5.7709 -0.8704 32 1 -0.5901 -6.3318 -1.6625 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257861258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = -54.976868 kcal Electronic energy + Delta-G solvation = -14931.057601 eV Core-core repulsion = 12504.527605 eV Total energy + Delta-G solvation = -2426.529996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68852 -37.59284 -35.68864 -34.57841 -33.20410 -31.33743 -28.55914 -26.31774 -24.91900 -22.84475 -21.85550 -20.51664 -18.37097 -17.62448 -16.88103 -16.23146 -15.84210 -15.70348 -15.18636 -15.03502 -14.72431 -14.23776 -13.79126 -13.46465 -13.12526 -12.98171 -12.83265 -12.72624 -12.38880 -12.01865 -11.86019 -11.69364 -11.43052 -11.17928 -10.91527 -9.88184 -9.16833 -8.88459 -8.22081 -6.80663 1.38728 1.39283 1.54723 2.23101 2.47166 2.81054 3.60620 3.81973 3.94856 4.05233 4.14203 4.26407 4.44525 4.52507 4.67102 4.82762 4.94070 5.08142 5.11184 5.22671 5.25914 5.30936 5.36981 5.42368 5.59340 5.79079 6.18001 6.20350 6.48673 6.67152 6.90166 7.46838 8.50119 8.69185 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.010999 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.126116 B = 2545.010564 C = 3220.203441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.537 3.463 10 O -0.613 6.613 11 N -0.643 5.643 12 C 0.115 3.885 13 C -0.129 4.129 14 C -0.111 4.111 15 C -0.109 4.109 16 C 0.152 3.848 17 H 0.057 0.943 18 C 0.097 3.903 19 N -0.848 5.848 20 H 0.272 0.728 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.016 0.984 31 H 0.344 0.656 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -8.191 -0.703 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.108 0.892 9 C 0.343 3.657 10 O -0.499 6.499 11 N -0.380 5.380 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.149 4.149 15 C -0.148 4.148 16 C 0.048 3.952 17 H 0.075 0.925 18 C -0.032 4.032 19 N -0.381 5.381 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.156 0.844 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.120 -8.342 -0.030 10.968 hybrid contribution -0.460 1.434 -0.830 1.719 sum 6.660 -6.908 -0.860 9.634 Atomic orbital electron populations 1.70182 1.09404 1.28711 1.36671 1.26908 0.95429 1.04698 0.91299 0.85105 0.79136 0.75644 0.79050 1.19009 1.19925 1.17050 1.21547 0.95417 0.90330 1.53519 0.89224 1.18603 0.86804 0.83925 0.76401 1.90568 1.15576 1.86545 1.57196 1.48130 1.07895 1.05951 1.76032 1.21639 0.80326 1.00526 0.98317 1.21911 1.01676 0.95375 0.97784 1.21509 0.94010 0.96857 1.02480 1.21759 0.96994 0.98838 0.97161 1.21020 0.91312 0.85272 0.97584 0.92518 1.21877 0.93408 0.87965 0.99987 1.58905 1.08924 1.27544 1.42681 0.91784 0.90411 0.92055 0.93797 0.88561 0.90208 0.90828 0.94825 0.89584 0.94230 0.96581 0.84425 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.05 11.86 21.84 0.26 -49.80 16 2 C 0.03 1.77 5.49 85.30 0.47 2.24 16 3 Si 0.99 41.07 29.56 68.60 2.03 43.10 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.57 -32.31 8.85 24.83 0.22 -32.09 16 8 H 0.09 4.57 5.71 -2.91 -0.02 4.55 16 9 C 0.54 31.08 7.54 86.36 0.65 31.74 16 10 O -0.61 -39.65 10.44 -4.32 -0.05 -39.69 16 11 N -0.64 -29.65 2.97 -800.06 -2.38 -32.03 16 12 C 0.11 4.20 6.32 86.36 0.55 4.74 16 13 C -0.13 -3.77 6.08 30.67 0.19 -3.59 16 14 C -0.11 -2.93 5.88 30.62 0.18 -2.75 16 15 C -0.11 -3.61 5.15 30.67 0.16 -3.46 16 16 C 0.15 6.11 3.10 44.98 0.14 6.25 16 17 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 18 C 0.10 4.35 4.63 86.30 0.40 4.75 16 19 N -0.85 -28.30 9.07 -186.71 -1.69 -29.99 16 20 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 21 H 0.08 3.03 5.37 -2.39 -0.01 3.02 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 2.55 7.83 -2.39 -0.02 2.53 16 29 H 0.04 2.10 7.10 -2.39 -0.02 2.08 16 30 H 0.02 0.85 6.37 -2.39 -0.02 0.84 16 31 H 0.34 10.67 9.08 -89.69 -0.81 9.86 16 32 H 0.34 9.63 8.95 -89.70 -0.80 8.83 16 Total: -1.00 -71.81 253.95 0.64 -71.18 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.48 Total: 29.40 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 2.95 Total: 7.83 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -3.81 Total: -111.81 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.05 Total: -39.69 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -71.81 0.64 -71.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257861258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.200 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds