Wall clock time and date at job start Mon Mar 30 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46931 * 270.00120 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00063 * 3 2 1 6 6 H 1.48499 * 109.47140 * 150.00080 * 3 2 1 7 7 C 1.40053 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99912 * 359.97438 * 7 2 1 10 10 O 1.21694 * 120.00170 * 5.01191 * 9 7 2 11 11 N 1.34774 * 120.00088 * 185.00668 * 9 7 2 12 12 C 1.46929 * 120.63457 * 354.74055 * 11 9 7 13 13 C 1.53184 * 108.77895 * 233.63399 * 12 11 9 14 14 C 1.53045 * 109.30962 * 305.35899 * 13 12 11 15 15 C 1.53042 * 109.53656 * 61.36906 * 14 13 12 16 16 H 1.09005 * 109.49899 * 58.61872 * 15 14 13 17 17 C 1.53001 * 109.49897 * 178.68037 * 15 14 13 18 18 N 1.46892 * 109.47549 * 184.99943 * 17 15 14 19 19 C 1.46925 * 120.63303 * 174.76403 * 11 9 7 20 20 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.58697 * 113.83609 * 12 11 9 22 22 H 1.09011 * 109.57911 * 353.41658 * 12 11 9 23 23 H 1.08997 * 109.49986 * 185.41398 * 13 12 11 24 24 H 1.08995 * 109.50474 * 65.31096 * 13 12 11 25 25 H 1.08999 * 109.45661 * 181.38608 * 14 13 12 26 26 H 1.08994 * 109.46073 * 301.36105 * 14 13 12 27 27 H 1.09001 * 109.46956 * 305.00512 * 17 15 14 28 28 H 1.09002 * 109.46666 * 64.99425 * 17 15 14 29 29 H 1.00900 * 111.00410 * 180.02562 * 18 17 15 30 30 H 1.00899 * 110.99888 * 303.95661 * 18 17 15 31 31 H 1.09007 * 109.58486 * 6.58308 * 19 11 9 32 32 H 1.09005 * 109.59050 * 246.16081 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2753 -2.4805 -0.0005 10 8 0.0618 -2.4825 -0.0921 11 7 1.9454 -3.6454 0.1008 12 6 3.4145 -3.6669 0.0963 13 6 3.8902 -4.6347 -0.9917 14 6 3.2423 -6.0034 -0.7700 15 6 1.7210 -5.8721 -0.8720 16 1 1.4547 -5.4771 -1.8524 17 6 1.0759 -7.2465 -0.6829 18 7 -0.3732 -7.1413 -0.8992 19 6 1.2207 -4.9182 0.2174 20 1 -0.4849 0.8400 -0.0004 21 1 3.7780 -4.0018 1.0677 22 1 3.7938 -2.6666 -0.1131 23 1 4.9745 -4.7332 -0.9422 24 1 3.6036 -4.2509 -1.9707 25 1 3.5982 -6.7007 -1.5284 26 1 3.5090 -6.3755 0.2191 27 1 1.5004 -7.9488 -1.4003 28 1 1.2673 -7.6014 0.3298 29 1 -0.8227 -8.0367 -0.7796 30 1 -0.7805 -6.4483 -0.2894 31 1 0.1525 -4.7437 0.0879 32 1 1.4053 -5.3553 1.1987 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257935688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:23 Heat of formation + Delta-G solvation = -48.179955 kcal Electronic energy + Delta-G solvation = -14611.413170 eV Core-core repulsion = 12185.177911 eV Total energy + Delta-G solvation = -2426.235260 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.76967 -36.21561 -34.25498 -32.54844 -31.37668 -29.96655 -26.64049 -24.44860 -24.11880 -21.19101 -20.12757 -18.82927 -16.55797 -15.76302 -15.50810 -14.95013 -14.41962 -14.03034 -13.87271 -13.50653 -12.87943 -12.76926 -12.47239 -12.21432 -11.53948 -11.33232 -10.99864 -10.96015 -10.62638 -10.53146 -10.36538 -10.20808 -9.87961 -9.74829 -8.83707 -8.52125 -7.54583 -7.16115 -6.17625 -4.62341 3.14757 3.21478 3.24492 4.10156 4.55587 4.61782 4.70789 5.14943 5.23994 5.33896 5.50585 5.69293 5.77361 5.81101 5.97024 6.04254 6.08166 6.19960 6.27753 6.48192 6.57528 6.61999 6.65605 6.89451 7.30643 7.47588 7.59251 7.67439 8.17078 8.39205 9.04158 9.47534 10.60273 10.79041 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044801 B = 0.008858 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.839601 B = 3160.066122 C = 3673.928448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.578 6.578 11 N -0.641 5.641 12 C 0.121 3.879 13 C -0.135 4.135 14 C -0.108 4.108 15 C -0.103 4.103 16 H 0.079 0.921 17 C 0.071 3.929 18 N -0.852 5.852 19 C 0.126 3.874 20 H 0.268 0.732 21 H 0.040 0.960 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.335 0.665 30 H 0.347 0.653 31 H 0.084 0.916 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -9.710 0.127 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.460 6.460 11 N -0.379 5.379 12 C -0.003 4.003 13 C -0.173 4.173 14 C -0.146 4.146 15 C -0.123 4.123 16 H 0.098 0.902 17 C -0.060 4.060 18 N -0.383 5.383 19 C 0.001 3.999 20 H 0.079 0.921 21 H 0.058 0.942 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.668 -9.349 -0.648 10.952 hybrid contribution 0.515 0.380 0.996 1.184 sum 6.183 -8.968 0.348 10.899 Atomic orbital electron populations 1.70016 1.07058 1.27246 1.35369 1.25734 0.94610 1.00279 0.92611 0.86400 0.80168 0.81513 0.78852 1.19718 1.20466 1.18899 1.20989 0.93566 0.89292 1.54311 0.90936 1.18251 0.86928 0.82249 0.76076 1.90587 1.14386 1.86140 1.54910 1.48144 1.04684 1.05679 1.79399 1.21414 0.82607 1.00229 0.96069 1.21947 0.99047 0.95685 1.00670 1.21471 0.94946 0.97244 1.00911 1.21599 0.94672 0.94579 1.01476 0.90231 1.21773 0.88507 0.97289 0.98425 1.58714 1.03950 1.12378 1.63218 1.21146 0.98622 0.85120 0.95008 0.92122 0.94220 0.89020 0.92007 0.91741 0.92686 0.92526 0.91534 0.95935 0.85385 0.83943 0.89767 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.84 55.55 0.66 -22.55 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.16 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.54 -15.45 8.86 -35.63 -0.32 -15.76 16 8 H 0.07 1.87 5.69 -52.48 -0.30 1.57 16 9 C 0.56 16.21 7.62 -12.99 -0.10 16.11 16 10 O -0.58 -18.95 14.46 5.19 0.08 -18.88 16 11 N -0.64 -14.94 2.97 -174.43 -0.52 -15.46 16 12 C 0.12 2.31 6.31 -3.71 -0.02 2.29 16 13 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 14 C -0.11 -1.54 5.17 -26.69 -0.14 -1.68 16 15 C -0.10 -1.71 2.55 -90.50 -0.23 -1.94 16 16 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 17 C 0.07 0.97 6.25 -3.83 -0.02 0.95 16 18 N -0.85 -11.88 9.62 -10.37 -0.10 -11.98 16 19 C 0.13 2.52 5.36 -3.71 -0.02 2.50 16 20 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.09 1.83 5.37 -51.92 -0.28 1.55 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.33 3.70 9.08 -39.29 -0.36 3.34 16 30 H 0.35 5.15 7.39 -39.29 -0.29 4.86 16 31 H 0.08 1.90 5.81 -51.92 -0.30 1.60 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -33.73 258.36 -6.59 -40.32 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.46 Total: 6.95 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.11 Total: 2.55 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.04 Total: -49.99 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.73 -6.59 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257935688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.862 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds