Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46931 * 270.00120 * 3 2 1 5 5 H 1.48497 * 109.47021 * 30.00063 * 3 2 1 6 6 H 1.48499 * 109.47140 * 150.00080 * 3 2 1 7 7 C 1.40053 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99912 * 359.97438 * 7 2 1 10 10 O 1.21694 * 120.00170 * 5.01191 * 9 7 2 11 11 N 1.34774 * 120.00088 * 185.00668 * 9 7 2 12 12 C 1.46929 * 120.63457 * 354.74055 * 11 9 7 13 13 C 1.53184 * 108.77895 * 233.63399 * 12 11 9 14 14 C 1.53045 * 109.30962 * 305.35899 * 13 12 11 15 15 C 1.53042 * 109.53656 * 61.36906 * 14 13 12 16 16 H 1.09005 * 109.49899 * 58.61872 * 15 14 13 17 17 C 1.53001 * 109.49897 * 178.68037 * 15 14 13 18 18 N 1.46892 * 109.47549 * 184.99943 * 17 15 14 19 19 C 1.46925 * 120.63303 * 174.76403 * 11 9 7 20 20 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.58697 * 113.83609 * 12 11 9 22 22 H 1.09011 * 109.57911 * 353.41658 * 12 11 9 23 23 H 1.08997 * 109.49986 * 185.41398 * 13 12 11 24 24 H 1.08995 * 109.50474 * 65.31096 * 13 12 11 25 25 H 1.08999 * 109.45661 * 181.38608 * 14 13 12 26 26 H 1.08994 * 109.46073 * 301.36105 * 14 13 12 27 27 H 1.09001 * 109.46956 * 305.00512 * 17 15 14 28 28 H 1.09002 * 109.46666 * 64.99425 * 17 15 14 29 29 H 1.00900 * 111.00410 * 180.02562 * 18 17 15 30 30 H 1.00899 * 110.99888 * 303.95661 * 18 17 15 31 31 H 1.09007 * 109.58486 * 6.58308 * 19 11 9 32 32 H 1.09005 * 109.59050 * 246.16081 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2753 -2.4805 -0.0005 10 8 0.0618 -2.4825 -0.0921 11 7 1.9454 -3.6454 0.1008 12 6 3.4145 -3.6669 0.0963 13 6 3.8902 -4.6347 -0.9917 14 6 3.2423 -6.0034 -0.7700 15 6 1.7210 -5.8721 -0.8720 16 1 1.4547 -5.4771 -1.8524 17 6 1.0759 -7.2465 -0.6829 18 7 -0.3732 -7.1413 -0.8992 19 6 1.2207 -4.9182 0.2174 20 1 -0.4849 0.8400 -0.0004 21 1 3.7780 -4.0018 1.0677 22 1 3.7938 -2.6666 -0.1131 23 1 4.9745 -4.7332 -0.9422 24 1 3.6036 -4.2509 -1.9707 25 1 3.5982 -6.7007 -1.5284 26 1 3.5090 -6.3755 0.2191 27 1 1.5004 -7.9488 -1.4003 28 1 1.2673 -7.6014 0.3298 29 1 -0.8227 -8.0367 -0.7796 30 1 -0.7805 -6.4483 -0.2894 31 1 0.1525 -4.7437 0.0879 32 1 1.4053 -5.3553 1.1987 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257935688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = -74.395868 kcal Electronic energy + Delta-G solvation = -14612.549978 eV Core-core repulsion = 12185.177911 eV Total energy + Delta-G solvation = -2427.372067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42594 -38.06152 -35.68005 -34.68368 -32.99166 -31.39085 -28.65426 -25.88207 -25.72930 -22.56064 -21.80178 -20.46283 -18.41466 -17.80776 -16.85126 -16.32946 -16.11038 -15.60585 -15.42434 -15.02960 -14.48480 -14.09936 -13.96990 -13.77384 -13.41775 -13.14981 -12.74215 -12.64847 -12.17028 -12.08293 -11.92900 -11.70202 -11.35304 -11.28797 -10.93007 -9.77233 -9.59642 -9.04291 -8.28854 -6.83766 1.39146 1.41057 1.56085 2.23874 2.46202 2.87785 3.57047 3.60999 3.91073 3.99989 4.08454 4.24785 4.41484 4.47163 4.64367 4.73774 4.85259 4.87130 4.97310 5.05567 5.13524 5.24449 5.28214 5.41138 5.55216 5.80255 6.15520 6.19807 6.44119 6.58974 6.87865 7.44320 8.47821 8.67974 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044801 B = 0.008858 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.839601 B = 3160.066122 C = 3673.928448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.538 3.462 10 O -0.634 6.634 11 N -0.646 5.646 12 C 0.113 3.887 13 C -0.128 4.128 14 C -0.102 4.102 15 C -0.095 4.095 16 H 0.045 0.955 17 C 0.077 3.923 18 N -0.867 5.867 19 C 0.124 3.876 20 H 0.273 0.727 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.351 0.649 30 H 0.338 0.662 31 H 0.048 0.952 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -10.552 0.300 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.607 4.607 8 H 0.112 0.888 9 C 0.344 3.656 10 O -0.521 6.521 11 N -0.382 5.382 12 C -0.010 4.010 13 C -0.167 4.167 14 C -0.140 4.140 15 C -0.115 4.115 16 H 0.063 0.937 17 C -0.054 4.054 18 N -0.398 5.398 19 C 0.000 4.000 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.118 0.882 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.165 0.835 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.502 -10.265 -0.475 13.337 hybrid contribution -0.363 0.555 0.956 1.163 sum 8.139 -9.710 0.481 12.679 Atomic orbital electron populations 1.70200 1.09613 1.28860 1.36702 1.27035 0.95521 1.05047 0.91209 0.85037 0.78905 0.75064 0.79415 1.18705 1.19813 1.16880 1.21532 0.94817 0.89842 1.54513 0.88811 1.18701 0.86611 0.84356 0.75924 1.90532 1.16677 1.87489 1.57414 1.48054 1.06738 1.05339 1.78077 1.21669 0.79797 1.00863 0.98635 1.21904 1.01383 0.95362 0.98007 1.21476 0.92455 0.96979 1.03064 1.21499 0.97000 0.95075 0.97897 0.93688 1.21759 0.87983 0.95572 1.00102 1.58713 1.04601 1.13262 1.63269 1.21282 0.96590 0.84724 0.97421 0.91667 0.92017 0.90435 0.88160 0.93752 0.89768 0.90543 0.89413 0.94118 0.83514 0.84937 0.93344 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.69 11.84 21.84 0.26 -51.43 16 2 C 0.03 1.51 5.50 85.31 0.47 1.98 16 3 Si 1.00 41.50 29.56 68.60 2.03 43.52 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.57 -33.01 8.86 24.83 0.22 -32.79 16 8 H 0.09 4.83 5.69 -2.91 -0.02 4.81 16 9 C 0.54 32.48 7.62 86.36 0.66 33.14 16 10 O -0.63 -44.09 14.46 -4.33 -0.06 -44.15 16 11 N -0.65 -30.60 2.97 -823.99 -2.45 -33.05 16 12 C 0.11 4.15 6.31 86.36 0.55 4.70 16 13 C -0.13 -3.66 6.08 30.67 0.19 -3.47 16 14 C -0.10 -2.55 5.17 30.62 0.16 -2.40 16 15 C -0.09 -3.03 2.55 -10.72 -0.03 -3.05 16 16 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 17 C 0.08 1.92 6.25 86.31 0.54 2.46 16 18 N -0.87 -23.65 9.62 -186.73 -1.80 -25.45 16 19 C 0.12 5.03 5.36 86.36 0.46 5.49 16 20 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.08 3.03 5.37 -2.38 -0.01 3.02 16 23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.35 7.32 9.08 -89.69 -0.81 6.51 16 30 H 0.34 10.32 7.39 -89.69 -0.66 9.66 16 31 H 0.05 2.31 5.81 -2.38 -0.01 2.30 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -77.76 258.36 0.85 -76.91 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.34 Total: 27.59 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 3.21 Total: 6.06 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.99 Total: -109.93 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.06 Total: -44.15 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -77.76 0.85 -76.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257935688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds