Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86809 * 119.99664 * 2 1 4 4 H 1.48502 * 109.46851 * 264.98666 * 3 2 1 5 5 H 1.48502 * 109.46677 * 144.99060 * 3 2 1 6 6 H 1.48496 * 109.47064 * 24.98926 * 3 2 1 7 7 C 1.40048 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 186.79256 * 7 2 1 9 9 C 1.46375 * 119.99847 * 6.79333 * 7 2 1 10 10 O 1.21684 * 119.99782 * 6.74660 * 9 7 2 11 11 N 1.34776 * 119.99914 * 186.74781 * 9 7 2 12 12 C 1.46496 * 119.99968 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47259 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.46282 * 295.01953 * 13 12 11 15 15 C 1.53036 * 109.46523 * 175.05014 * 13 12 11 16 16 C 1.53116 * 109.28079 * 180.80541 * 15 13 12 17 17 C 1.53116 * 109.16096 * 57.65487 * 16 15 13 18 18 C 1.53037 * 109.27978 * 302.34354 * 17 16 15 19 19 N 1.46849 * 109.51933 * 59.18022 * 18 17 16 20 20 H 0.97000 * 120.00681 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00094 * 0.02562 * 11 9 7 22 22 H 1.09002 * 109.46971 * 299.99764 * 12 11 9 23 23 H 1.08997 * 109.47283 * 59.99585 * 12 11 9 24 24 H 1.09001 * 109.50777 * 300.74707 * 15 13 12 25 25 H 1.09001 * 109.50317 * 60.86554 * 15 13 12 26 26 H 1.09003 * 109.52282 * 297.75270 * 16 15 13 27 27 H 1.08997 * 109.57544 * 177.59315 * 16 15 13 28 28 H 1.09001 * 109.50329 * 182.40535 * 17 16 15 29 29 H 1.09002 * 109.53307 * 62.31078 * 17 16 15 30 30 H 1.08997 * 109.46792 * 299.16946 * 18 17 16 31 31 H 1.08998 * 109.46538 * 179.19041 * 18 17 16 32 32 H 1.00896 * 111.00100 * 174.15853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.5940 1.9853 -1.3948 5 1 3.4812 1.4731 0.8033 6 1 1.3891 2.6810 0.5914 7 6 2.0070 -1.2128 0.0005 8 1 3.0813 -1.2160 0.1112 9 6 1.2828 -2.4761 -0.1488 10 8 0.0914 -2.4688 -0.3960 11 7 1.9357 -3.6473 -0.0126 12 6 1.2109 -4.9116 -0.1616 13 6 2.1774 -6.0804 0.0402 14 1 2.9211 -6.0784 -0.7566 15 6 1.3987 -7.3974 0.0073 16 6 2.3668 -8.5627 0.2297 17 6 3.0898 -8.3676 1.5652 18 6 3.8195 -7.0225 1.5530 19 7 2.8503 -5.9404 1.3380 20 1 -0.4851 0.8400 -0.0004 21 1 2.8854 -3.6530 0.1848 22 1 0.4165 -4.9648 0.5829 23 1 0.7773 -4.9664 -1.1601 24 1 0.6455 -7.3947 0.7952 25 1 0.9122 -7.5084 -0.9617 26 1 3.0969 -8.5892 -0.5792 27 1 1.8112 -9.5003 0.2498 28 1 3.8114 -9.1718 1.7093 29 1 2.3636 -8.3805 2.3781 30 1 4.5555 -7.0158 0.7491 31 1 4.3235 -6.8740 2.5080 32 1 3.2924 -5.0373 1.4205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258022050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -54.770040 kcal Electronic energy + Delta-G solvation = -14143.676728 eV Core-core repulsion = 11717.155700 eV Total energy + Delta-G solvation = -2426.521027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.84482 -36.94887 -33.63509 -32.36893 -31.76074 -30.58100 -26.84233 -25.06685 -23.28773 -21.40220 -19.60110 -19.51373 -17.44213 -16.08676 -15.27366 -15.03184 -14.48079 -14.27058 -13.84631 -13.68731 -13.08665 -12.84165 -12.68032 -12.18493 -11.74640 -11.34433 -11.16332 -11.03560 -10.76537 -10.73601 -10.46288 -10.32798 -10.28822 -10.10547 -8.81493 -8.25038 -7.57790 -7.45829 -6.18422 -4.60058 3.16644 3.22757 3.25488 4.12441 4.27640 4.62886 4.74057 4.87510 4.91925 5.11131 5.35617 5.46588 5.51899 5.60667 5.75196 5.80918 5.84637 5.91782 5.98061 6.12879 6.20896 6.39274 6.45484 6.69097 7.24059 7.46066 7.55293 7.94718 8.13118 8.35693 9.05487 9.55728 10.63284 10.81551 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063018 B = 0.006327 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.209916 B = 4424.444734 C = 4743.589669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.582 6.582 11 N -0.766 5.766 12 C 0.139 3.861 13 C 0.080 3.920 14 H 0.037 0.963 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.058 3.942 19 N -0.683 5.683 20 H 0.269 0.731 21 H 0.374 0.626 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 -12.617 1.574 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.205 1.205 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.465 6.465 11 N -0.422 5.422 12 C 0.013 3.987 13 C -0.030 4.030 14 H 0.055 0.945 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.072 4.072 19 N -0.317 5.317 20 H 0.079 0.921 21 H 0.206 0.794 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.003 -12.816 1.737 14.258 hybrid contribution 1.674 1.049 -0.507 2.039 sum 7.676 -11.767 1.231 14.103 Atomic orbital electron populations 1.69984 1.07131 1.27377 1.35385 1.25683 0.94559 1.00248 0.92525 0.86400 0.80039 0.81378 0.78961 1.19689 1.19028 1.20534 1.20858 0.94128 0.89672 1.53899 0.91509 1.18187 0.86719 0.82350 0.76606 1.90588 1.15894 1.86879 1.53182 1.46096 1.11221 1.05176 1.79692 1.20960 0.94259 0.83132 1.00325 1.21729 0.95995 0.95637 0.89625 0.94529 1.21565 0.98120 0.93038 1.02181 1.21564 0.98535 0.98269 0.97366 1.21587 0.99586 0.96167 0.98176 1.21897 0.93091 0.91978 1.00202 1.60248 1.32910 1.05790 1.32753 0.92055 0.79404 0.92518 0.93129 0.90871 0.91512 0.92522 0.92003 0.92092 0.91165 0.95642 0.91029 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.46 11.91 55.55 0.66 -22.80 16 2 C 0.09 2.53 5.48 -17.37 -0.10 2.44 16 3 Si 0.91 20.35 29.56 -169.99 -5.03 15.32 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -15.71 9.53 -35.63 -0.34 -16.05 16 8 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 9 C 0.56 16.20 7.72 -12.99 -0.10 16.10 16 10 O -0.58 -19.32 15.11 5.20 0.08 -19.25 16 11 N -0.77 -17.39 5.25 -61.73 -0.32 -17.72 16 12 C 0.14 2.76 5.37 -4.05 -0.02 2.74 16 13 C 0.08 1.22 2.67 -67.72 -0.18 1.04 16 14 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.11 -1.44 5.37 -26.65 -0.14 -1.58 16 16 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 17 C -0.12 -1.25 6.09 -26.65 -0.16 -1.41 16 18 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 19 N -0.68 -9.94 6.50 -106.76 -0.69 -10.64 16 20 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 21 H 0.37 7.41 7.09 -40.82 -0.29 7.12 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.35 5.19 7.07 -39.29 -0.28 4.91 16 LS Contribution 264.32 15.07 3.98 3.98 Total: -1.00 -33.93 264.32 -7.31 -41.24 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.76 Total: 7.38 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.23 Total: 2.47 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.36 Total: -51.15 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.93 -7.31 -41.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258022050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.530 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds