Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86809 * 119.99664 * 2 1 4 4 H 1.48502 * 109.46851 * 264.98666 * 3 2 1 5 5 H 1.48502 * 109.46677 * 144.99060 * 3 2 1 6 6 H 1.48496 * 109.47064 * 24.98926 * 3 2 1 7 7 C 1.40048 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 186.79256 * 7 2 1 9 9 C 1.46375 * 119.99847 * 6.79333 * 7 2 1 10 10 O 1.21684 * 119.99782 * 6.74660 * 9 7 2 11 11 N 1.34776 * 119.99914 * 186.74781 * 9 7 2 12 12 C 1.46496 * 119.99968 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47259 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.46282 * 295.01953 * 13 12 11 15 15 C 1.53036 * 109.46523 * 175.05014 * 13 12 11 16 16 C 1.53116 * 109.28079 * 180.80541 * 15 13 12 17 17 C 1.53116 * 109.16096 * 57.65487 * 16 15 13 18 18 C 1.53037 * 109.27978 * 302.34354 * 17 16 15 19 19 N 1.46849 * 109.51933 * 59.18022 * 18 17 16 20 20 H 0.97000 * 120.00681 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00094 * 0.02562 * 11 9 7 22 22 H 1.09002 * 109.46971 * 299.99764 * 12 11 9 23 23 H 1.08997 * 109.47283 * 59.99585 * 12 11 9 24 24 H 1.09001 * 109.50777 * 300.74707 * 15 13 12 25 25 H 1.09001 * 109.50317 * 60.86554 * 15 13 12 26 26 H 1.09003 * 109.52282 * 297.75270 * 16 15 13 27 27 H 1.08997 * 109.57544 * 177.59315 * 16 15 13 28 28 H 1.09001 * 109.50329 * 182.40535 * 17 16 15 29 29 H 1.09002 * 109.53307 * 62.31078 * 17 16 15 30 30 H 1.08997 * 109.46792 * 299.16946 * 18 17 16 31 31 H 1.08998 * 109.46538 * 179.19041 * 18 17 16 32 32 H 1.00896 * 111.00100 * 174.15853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.5940 1.9853 -1.3948 5 1 3.4812 1.4731 0.8033 6 1 1.3891 2.6810 0.5914 7 6 2.0070 -1.2128 0.0005 8 1 3.0813 -1.2160 0.1112 9 6 1.2828 -2.4761 -0.1488 10 8 0.0914 -2.4688 -0.3960 11 7 1.9357 -3.6473 -0.0126 12 6 1.2109 -4.9116 -0.1616 13 6 2.1774 -6.0804 0.0402 14 1 2.9211 -6.0784 -0.7566 15 6 1.3987 -7.3974 0.0073 16 6 2.3668 -8.5627 0.2297 17 6 3.0898 -8.3676 1.5652 18 6 3.8195 -7.0225 1.5530 19 7 2.8503 -5.9404 1.3380 20 1 -0.4851 0.8400 -0.0004 21 1 2.8854 -3.6530 0.1848 22 1 0.4165 -4.9648 0.5829 23 1 0.7773 -4.9664 -1.1601 24 1 0.6455 -7.3947 0.7952 25 1 0.9122 -7.5084 -0.9617 26 1 3.0969 -8.5892 -0.5792 27 1 1.8112 -9.5003 0.2498 28 1 3.8114 -9.1718 1.7093 29 1 2.3636 -8.3805 2.3781 30 1 4.5555 -7.0158 0.7491 31 1 4.3235 -6.8740 2.5080 32 1 3.2924 -5.0373 1.4205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258022050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -81.381568 kcal Electronic energy + Delta-G solvation = -14144.830690 eV Core-core repulsion = 11717.155700 eV Total energy + Delta-G solvation = -2427.674990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16678 -38.89115 -35.38560 -34.50125 -32.83552 -32.06356 -28.78877 -26.67817 -24.35020 -22.71654 -21.57378 -20.61274 -19.36331 -17.62957 -17.14953 -16.39094 -16.16887 -15.84565 -15.11132 -14.91425 -14.55571 -14.38683 -14.00232 -13.63243 -13.25947 -13.11067 -12.82038 -12.77095 -12.53381 -12.04943 -12.02601 -11.66128 -11.36278 -11.24737 -10.92625 -9.88533 -9.50141 -9.36881 -8.32174 -6.85150 1.40555 1.43052 1.57424 2.25023 2.46677 3.00250 3.24362 3.62700 3.81582 3.96056 4.06352 4.20163 4.36527 4.41734 4.60169 4.70478 4.80679 4.88867 4.97562 5.01881 5.10658 5.22920 5.30155 5.31898 5.49025 5.85766 6.10128 6.20724 6.26616 6.42412 6.86422 7.51922 8.48063 8.66421 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063018 B = 0.006327 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.209916 B = 4424.444734 C = 4743.589669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.247 1.247 6 H -0.273 1.273 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.538 3.462 10 O -0.636 6.636 11 N -0.750 5.750 12 C 0.141 3.859 13 C 0.094 3.906 14 H 0.046 0.954 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.116 4.116 18 C 0.055 3.945 19 N -0.697 5.697 20 H 0.275 0.725 21 H 0.391 0.609 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.970 -12.996 1.779 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.170 1.170 6 H -0.198 1.198 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.343 3.657 10 O -0.524 6.524 11 N -0.405 5.405 12 C 0.016 3.984 13 C -0.016 4.016 14 H 0.063 0.937 15 C -0.149 4.149 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.073 4.073 19 N -0.331 5.331 20 H 0.085 0.915 21 H 0.225 0.775 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.444 -13.258 1.956 15.840 hybrid contribution 0.917 1.093 -0.554 1.530 sum 9.361 -12.165 1.402 15.414 Atomic orbital electron populations 1.70154 1.09705 1.29139 1.36436 1.26997 0.95480 1.05068 0.91041 0.84999 0.78668 0.74819 0.79556 1.18717 1.17036 1.19792 1.21413 0.95364 0.90237 1.54185 0.89284 1.18643 0.86360 0.84366 0.76378 1.90539 1.18137 1.88034 1.55682 1.45731 1.11953 1.04777 1.78071 1.21026 0.94869 0.83778 0.98709 1.21569 0.95248 0.94347 0.90461 0.93662 1.21583 0.98320 0.92877 1.02159 1.21552 0.98240 0.97654 0.97781 1.21611 0.99854 0.96248 0.97682 1.22036 0.92743 0.91418 1.01128 1.60271 1.34164 1.06522 1.32129 0.91476 0.77477 0.95135 0.94417 0.92108 0.90942 0.91619 0.90288 0.89568 0.92105 0.94711 0.89874 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.47 11.91 21.83 0.26 -51.21 16 2 C 0.03 1.65 5.48 85.31 0.47 2.12 16 3 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.58 -33.12 9.53 24.83 0.24 -32.88 16 8 H 0.09 4.55 7.86 -2.91 -0.02 4.53 16 9 C 0.54 32.17 7.72 86.36 0.67 32.83 16 10 O -0.64 -44.11 15.11 -4.30 -0.06 -44.18 16 11 N -0.75 -34.68 5.25 -467.43 -2.45 -37.13 16 12 C 0.14 5.78 5.37 86.38 0.46 6.25 16 13 C 0.09 2.78 2.67 44.94 0.12 2.90 16 14 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 15 C -0.11 -2.77 5.37 30.65 0.16 -2.60 16 16 C -0.11 -2.16 6.00 30.67 0.18 -1.97 16 17 C -0.12 -2.14 6.09 30.65 0.19 -1.95 16 18 C 0.06 1.16 6.55 86.33 0.57 1.73 16 19 N -0.70 -19.52 6.50 -491.68 -3.20 -22.71 16 20 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 21 H 0.39 15.39 7.09 -92.71 -0.66 14.73 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.34 9.90 7.07 -89.70 -0.63 9.27 16 Total: -1.00 -75.62 264.32 -0.54 -76.17 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.18 Total: 29.32 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 3.06 Total: 6.42 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -5.39 Total: -111.05 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.06 Total: -44.18 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -75.62 -0.54 -76.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258022050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.216 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds