Wall clock time and date at job start Mon Mar 30 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 120.00370 * 2 1 4 4 H 1.48502 * 109.47089 * 240.00095 * 3 2 1 5 5 H 1.48497 * 109.46671 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47356 * 119.99692 * 3 2 1 7 7 C 1.40054 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99804 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00408 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99655 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99740 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47064 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.49622 * 304.91481 * 13 12 11 15 15 C 1.53203 * 109.49217 * 184.82322 * 13 12 11 16 16 C 1.53123 * 109.11533 * 182.41941 * 15 13 12 17 17 C 1.53039 * 109.31189 * 57.63615 * 16 15 13 18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15 19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16 20 20 H 0.97000 * 119.99705 * 359.97438 * 1 2 3 21 21 H 0.96995 * 120.00534 * 0.02562 * 11 9 7 22 22 H 1.08999 * 109.47284 * 60.00016 * 12 11 9 23 23 H 1.09002 * 109.47148 * 299.99776 * 12 11 9 24 24 H 1.08994 * 109.57907 * 62.50732 * 15 13 12 25 25 H 1.08997 * 109.51203 * 302.28996 * 15 13 12 26 26 H 1.09002 * 109.50371 * 297.67165 * 16 15 13 27 27 H 1.09003 * 109.50070 * 177.59325 * 16 15 13 28 28 H 1.09000 * 109.46148 * 60.81334 * 17 16 15 29 29 H 1.09002 * 109.46208 * 180.79044 * 17 16 15 30 30 H 1.00903 * 110.99558 * 185.83726 * 18 17 16 31 31 H 1.09004 * 109.46012 * 58.27074 * 19 18 17 32 32 H 1.08994 * 109.46057 * 178.23653 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.2163 -4.9164 0.0033 13 6 2.2106 -6.0794 0.0051 14 1 2.8947 -5.9745 -0.8371 15 6 1.4490 -7.4032 -0.1157 16 6 2.4465 -8.5632 -0.0523 17 6 3.2341 -8.4823 1.2574 18 7 3.9447 -7.1988 1.3241 19 6 3.0051 -6.0704 1.3129 20 1 -0.4850 0.8401 0.0004 21 1 2.9188 -3.6478 0.0031 22 1 0.5900 -4.9747 -0.8869 23 1 0.5893 -4.9735 0.8931 24 1 0.9161 -7.4326 -1.0661 25 1 0.7369 -7.4898 0.7050 26 1 3.1344 -8.4982 -0.8953 27 1 1.9073 -9.5096 -0.0947 28 1 2.5470 -8.5613 2.0999 29 1 3.9549 -9.2990 1.2988 30 1 4.5464 -7.1603 2.1332 31 1 2.3191 -6.1608 2.1552 32 1 3.5593 -5.1355 1.3948 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258022395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:01 Heat of formation + Delta-G solvation = -84.431584 kcal Electronic energy + Delta-G solvation = -14108.301286 eV Core-core repulsion = 11680.494037 eV Total energy + Delta-G solvation = -2427.807248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13648 -38.91819 -35.54581 -34.52224 -33.03818 -31.77721 -28.68812 -26.32233 -24.71256 -22.79174 -21.56637 -20.64895 -19.22810 -17.59300 -17.18012 -16.37770 -16.01715 -15.83136 -15.39224 -14.94869 -14.60455 -14.36687 -14.01145 -13.67446 -13.41687 -13.08197 -12.80570 -12.66451 -12.55467 -12.06284 -11.99949 -11.68944 -11.36893 -11.26409 -10.91719 -9.88112 -9.48167 -9.41252 -8.28995 -6.85985 1.40606 1.44423 1.56204 2.25542 2.47187 3.12378 3.23659 3.61528 3.83991 3.90375 3.97428 4.19124 4.38108 4.45720 4.62180 4.68431 4.77456 4.84469 4.88114 5.01077 5.06045 5.17382 5.30158 5.31703 5.46325 5.87558 6.04713 6.23273 6.27589 6.50781 6.86461 7.55065 8.49041 8.67420 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063616 B = 0.006206 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.034414 B = 4510.976610 C = 4818.214230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.753 5.753 12 C 0.142 3.858 13 C -0.081 4.081 14 H 0.080 0.920 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.054 3.946 18 N -0.692 5.692 19 C 0.069 3.931 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.032 0.968 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.352 0.648 31 H 0.022 0.978 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 -13.298 2.029 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.611 4.611 8 H 0.106 0.894 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.408 5.408 12 C 0.017 3.983 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.075 4.075 18 N -0.324 5.324 19 C -0.061 4.061 20 H 0.084 0.916 21 H 0.229 0.771 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.171 0.829 31 H 0.040 0.960 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.063 -13.229 1.362 15.552 hybrid contribution -0.131 0.760 0.899 1.185 sum 7.932 -12.469 2.261 14.950 Atomic orbital electron populations 1.70191 1.09624 1.29026 1.36474 1.27013 0.95528 1.05055 0.91128 0.85041 0.78164 0.74552 0.80330 1.17792 1.19891 1.17744 1.21425 0.94771 0.90106 1.54830 0.89366 1.18658 0.86846 0.84503 0.76087 1.90543 1.16323 1.88078 1.57376 1.45819 1.09226 1.04687 1.81019 1.20967 0.94503 0.84038 0.98838 1.21291 0.96197 0.93619 0.98883 0.90173 1.21595 0.97971 0.93526 1.02189 1.21570 0.97436 0.97858 0.98053 1.22033 0.97075 0.91580 0.96848 1.60262 1.22143 1.02079 1.47956 1.21806 0.94160 0.94520 0.95575 0.91555 0.77136 0.94991 0.95374 0.91392 0.92386 0.91310 0.89620 0.95343 0.88922 0.82910 0.95967 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.46 11.83 21.84 0.26 -51.20 16 2 C 0.03 1.57 5.50 85.31 0.47 2.04 16 3 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.57 -33.27 9.54 24.83 0.24 -33.03 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.53 32.05 7.75 86.36 0.67 32.72 16 10 O -0.64 -44.04 15.02 -4.30 -0.06 -44.11 16 11 N -0.75 -35.04 5.29 -467.40 -2.47 -37.51 16 12 C 0.14 5.75 5.07 86.38 0.44 6.18 16 13 C -0.08 -2.38 2.39 -10.71 -0.03 -2.41 16 14 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 15 C -0.11 -2.80 5.30 30.70 0.16 -2.64 16 16 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 17 C 0.05 0.98 6.55 86.32 0.57 1.55 16 18 N -0.69 -14.96 6.85 -513.99 -3.52 -18.48 16 19 C 0.07 1.87 5.70 86.32 0.49 2.36 16 20 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 21 H 0.39 15.91 7.64 -92.71 -0.71 15.21 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.35 6.29 8.90 -89.69 -0.80 5.49 16 31 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 2.02 7.21 -2.39 -0.02 2.00 16 Total: -1.00 -75.57 265.04 -0.96 -76.54 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.39 Total: 26.48 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 3.19 Total: 4.85 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -5.73 Total: -107.19 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.06 Total: -44.11 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -75.57 -0.96 -76.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258022395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds