Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47667 * 240.00242 * 3 2 1 5 5 H 1.48503 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47114 * 120.00249 * 3 2 1 7 7 C 1.40051 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99705 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00123 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99828 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99793 * 179.97438 * 11 9 7 13 13 C 1.52994 * 109.46590 * 180.02562 * 12 11 9 14 14 H 1.09005 * 109.50824 * 55.08235 * 13 12 11 15 15 C 1.53129 * 109.50247 * 175.15758 * 13 12 11 16 16 C 1.53123 * 109.15931 * 177.55401 * 15 13 12 17 17 C 1.53039 * 109.31189 * 302.40768 * 16 15 13 18 18 N 1.46842 * 109.52266 * 59.15550 * 17 16 15 19 19 C 1.46849 * 111.20050 * 298.25785 * 18 17 16 20 20 H 0.96997 * 120.00313 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99816 * 359.97438 * 11 9 7 22 22 H 1.08997 * 109.46959 * 59.99819 * 12 11 9 23 23 H 1.08999 * 109.46879 * 299.99658 * 12 11 9 24 24 H 1.09000 * 109.49266 * 57.67092 * 15 13 12 25 25 H 1.08995 * 109.55725 * 297.47838 * 15 13 12 26 26 H 1.09002 * 109.50371 * 182.44317 * 16 15 13 27 27 H 1.09003 * 109.50070 * 62.36477 * 16 15 13 28 28 H 1.08995 * 109.46501 * 179.17754 * 17 16 15 29 29 H 1.09009 * 109.45500 * 299.14277 * 17 16 15 30 30 H 1.00898 * 111.00242 * 62.36287 * 18 17 16 31 31 H 1.09001 * 109.46071 * 181.75754 * 19 18 17 32 32 H 1.08995 * 109.46417 * 301.72694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9491 -3.6477 -0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2109 -6.0792 0.0005 14 1 2.8945 -5.9733 0.8430 15 6 1.4501 -7.4024 0.1230 16 6 2.4470 -8.5630 0.0613 17 6 3.2356 -8.4837 -1.2479 18 7 3.9461 -7.2003 -1.3159 19 6 3.0063 -6.0720 -1.3069 20 1 -0.4850 0.8400 0.0004 21 1 2.9191 -3.6476 -0.0009 22 1 0.5896 -4.9743 -0.8897 23 1 0.5904 -4.9739 0.8903 24 1 0.7381 -7.4899 -0.6977 25 1 0.9171 -7.4303 1.0733 26 1 1.9074 -9.5090 0.1043 27 1 3.1344 -8.4974 0.9047 28 1 3.9563 -9.3004 -1.2878 29 1 2.5490 -8.5638 -2.0908 30 1 4.6169 -7.1182 -0.5667 31 1 3.5605 -5.1370 -1.3896 32 1 2.3209 -6.1634 -2.1495 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258022403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = -59.264908 kcal Electronic energy + Delta-G solvation = -14124.704545 eV Core-core repulsion = 11697.988605 eV Total energy + Delta-G solvation = -2426.715939 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.06134 -37.02935 -33.82309 -32.38108 -31.65674 -30.41396 -26.70488 -24.72272 -23.57438 -21.56001 -20.14252 -19.53303 -17.18166 -15.87723 -15.30581 -15.19168 -14.73675 -14.40949 -14.04883 -13.51538 -13.03830 -12.74684 -12.31937 -12.13299 -11.81389 -11.37595 -11.22403 -11.16805 -11.05335 -10.78599 -10.49677 -10.43438 -10.35179 -10.14588 -8.82493 -8.31417 -7.59140 -7.46055 -6.15981 -4.61647 3.17502 3.22154 3.24178 4.12457 4.31473 4.61729 4.66062 4.83483 4.91374 5.08871 5.19366 5.40886 5.46395 5.61449 5.69209 5.80991 5.86172 5.92001 5.99830 6.04628 6.21370 6.31588 6.54901 6.63301 7.02096 7.37416 7.45410 7.95614 8.13142 8.35321 9.04786 9.56835 10.63012 10.81730 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064157 B = 0.006209 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.325103 B = 4508.658998 C = 4813.174805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.142 3.858 13 C -0.133 4.133 14 H 0.070 0.930 15 C -0.113 4.113 16 C -0.156 4.156 17 C 0.056 3.944 18 N -0.687 5.687 19 C 0.062 3.938 20 H 0.268 0.732 21 H 0.379 0.621 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.338 0.662 31 H 0.081 0.919 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -12.815 -0.364 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.423 5.423 12 C 0.016 3.984 13 C -0.154 4.154 14 H 0.088 0.912 15 C -0.151 4.151 16 C -0.195 4.195 17 C -0.074 4.074 18 N -0.315 5.315 19 C -0.067 4.067 20 H 0.079 0.921 21 H 0.210 0.790 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.881 -12.724 -1.078 14.059 hybrid contribution 0.551 0.761 1.051 1.410 sum 6.432 -11.963 -0.027 13.583 Atomic orbital electron populations 1.70011 1.07071 1.27322 1.35405 1.25705 0.94601 1.00267 0.92619 0.86440 0.79812 0.81077 0.79425 1.19269 1.20575 1.19326 1.20859 0.93524 0.89480 1.54509 0.91520 1.18212 0.87200 0.82499 0.76318 1.90594 1.14144 1.86921 1.54867 1.46140 1.08423 1.04955 1.82793 1.20812 0.93544 0.83485 1.00546 1.22097 0.98611 0.95226 0.99430 0.91166 1.21543 0.97717 0.93508 1.02310 1.22259 0.99197 0.98879 0.99207 1.22023 0.96965 0.91926 0.96519 1.60698 1.17326 1.02049 1.51412 1.22100 0.94507 0.93820 0.96286 0.92086 0.78982 0.93408 0.93592 0.91654 0.91801 0.91667 0.92165 0.91128 0.91028 0.84484 0.90107 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.55 16.03 7.75 -12.99 -0.10 15.93 16 10 O -0.58 -19.26 15.02 5.20 0.08 -19.19 16 11 N -0.77 -17.25 5.29 -61.73 -0.33 -17.58 16 12 C 0.14 2.75 5.07 -4.04 -0.02 2.72 16 13 C -0.13 -1.88 2.37 -90.54 -0.21 -2.10 16 14 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.11 -1.38 5.29 -26.60 -0.14 -1.52 16 16 C -0.16 -1.56 6.08 -26.65 -0.16 -1.72 16 17 C 0.06 0.57 6.55 -3.84 -0.03 0.54 16 18 N -0.69 -8.04 6.87 -113.82 -0.78 -8.83 16 19 C 0.06 0.85 5.70 -3.83 -0.02 0.83 16 20 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 21 H 0.38 7.46 7.64 -40.82 -0.31 7.15 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.34 3.56 8.86 -39.29 -0.35 3.21 16 31 H 0.08 1.17 7.20 -51.93 -0.37 0.79 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 264.99 15.07 3.99 3.99 Total: -1.00 -33.78 264.99 -7.33 -41.11 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.81 Total: 6.86 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.12 Total: 1.09 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.45 Total: -49.17 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.08 Total: -19.19 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.78 -7.33 -41.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258022403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.156 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds