Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47667 * 240.00242 * 3 2 1 5 5 H 1.48503 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47114 * 120.00249 * 3 2 1 7 7 C 1.40051 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99705 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00123 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99828 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99793 * 179.97438 * 11 9 7 13 13 C 1.52994 * 109.46590 * 180.02562 * 12 11 9 14 14 H 1.09005 * 109.50824 * 55.08235 * 13 12 11 15 15 C 1.53129 * 109.50247 * 175.15758 * 13 12 11 16 16 C 1.53123 * 109.15931 * 177.55401 * 15 13 12 17 17 C 1.53039 * 109.31189 * 302.40768 * 16 15 13 18 18 N 1.46842 * 109.52266 * 59.15550 * 17 16 15 19 19 C 1.46849 * 111.20050 * 298.25785 * 18 17 16 20 20 H 0.96997 * 120.00313 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99816 * 359.97438 * 11 9 7 22 22 H 1.08997 * 109.46959 * 59.99819 * 12 11 9 23 23 H 1.08999 * 109.46879 * 299.99658 * 12 11 9 24 24 H 1.09000 * 109.49266 * 57.67092 * 15 13 12 25 25 H 1.08995 * 109.55725 * 297.47838 * 15 13 12 26 26 H 1.09002 * 109.50371 * 182.44317 * 16 15 13 27 27 H 1.09003 * 109.50070 * 62.36477 * 16 15 13 28 28 H 1.08995 * 109.46501 * 179.17754 * 17 16 15 29 29 H 1.09009 * 109.45500 * 299.14277 * 17 16 15 30 30 H 1.00898 * 111.00242 * 62.36287 * 18 17 16 31 31 H 1.09001 * 109.46071 * 181.75754 * 19 18 17 32 32 H 1.08995 * 109.46417 * 301.72694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9491 -3.6477 -0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2109 -6.0792 0.0005 14 1 2.8945 -5.9733 0.8430 15 6 1.4501 -7.4024 0.1230 16 6 2.4470 -8.5630 0.0613 17 6 3.2356 -8.4837 -1.2479 18 7 3.9461 -7.2003 -1.3159 19 6 3.0063 -6.0720 -1.3069 20 1 -0.4850 0.8400 0.0004 21 1 2.9191 -3.6476 -0.0009 22 1 0.5896 -4.9743 -0.8897 23 1 0.5904 -4.9739 0.8903 24 1 0.7381 -7.4899 -0.6977 25 1 0.9171 -7.4303 1.0733 26 1 1.9074 -9.5090 0.1043 27 1 3.1344 -8.4974 0.9047 28 1 3.9563 -9.3004 -1.2878 29 1 2.5490 -8.5638 -2.0908 30 1 4.6169 -7.1182 -0.5667 31 1 3.5605 -5.1370 -1.3896 32 1 2.3209 -6.1634 -2.1495 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258022403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = -86.140129 kcal Electronic energy + Delta-G solvation = -14125.869942 eV Core-core repulsion = 11697.988605 eV Total energy + Delta-G solvation = -2427.881336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28457 -38.99525 -35.54423 -34.52222 -32.79439 -31.80298 -28.69407 -26.30870 -24.59068 -22.77432 -21.59190 -21.21104 -19.19237 -17.47073 -16.85007 -16.48300 -16.22347 -15.89781 -15.54684 -14.89103 -14.57784 -14.33160 -13.78175 -13.45044 -13.15656 -13.05608 -12.83590 -12.67568 -12.57104 -12.21679 -12.07471 -12.01753 -11.56634 -11.38083 -10.92256 -9.88973 -9.51380 -9.25771 -8.29495 -6.86542 1.40435 1.44156 1.55971 2.25101 2.46689 3.10239 3.36250 3.59780 3.75989 3.87104 3.96604 4.13485 4.33874 4.46125 4.55366 4.64145 4.73782 4.82833 4.99585 5.01724 5.10251 5.15407 5.21405 5.31170 5.39068 5.86620 6.05476 6.22704 6.26297 6.51631 6.86008 7.54325 8.48452 8.66882 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064157 B = 0.006209 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.325103 B = 4508.658998 C = 4813.174805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.144 3.856 13 C -0.117 4.117 14 H 0.080 0.920 15 C -0.113 4.113 16 C -0.147 4.147 17 C 0.054 3.946 18 N -0.688 5.688 19 C 0.070 3.930 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.348 0.652 31 H 0.071 0.929 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -13.235 -0.200 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.019 3.981 13 C -0.137 4.137 14 H 0.098 0.902 15 C -0.151 4.151 16 C -0.186 4.186 17 C -0.075 4.075 18 N -0.316 5.316 19 C -0.061 4.061 20 H 0.084 0.916 21 H 0.229 0.771 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.089 0.911 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.233 -13.205 -0.912 15.588 hybrid contribution -0.179 0.802 0.995 1.290 sum 8.053 -12.403 0.083 14.789 Atomic orbital electron populations 1.70188 1.09638 1.29039 1.36474 1.27014 0.95521 1.05076 0.91127 0.85044 0.78165 0.74553 0.80339 1.17746 1.19928 1.17755 1.21426 0.94784 0.90088 1.54809 0.89312 1.18662 0.86844 0.84532 0.76084 1.90546 1.16367 1.88076 1.57362 1.45795 1.09198 1.04652 1.81049 1.20906 0.94492 0.84053 0.98675 1.21982 0.97521 0.93913 1.00309 0.90201 1.21559 0.98174 0.93303 1.02106 1.22197 0.98681 0.98331 0.99361 1.22114 0.97408 0.91610 0.96417 1.60679 1.16988 1.01946 1.52009 1.21923 0.94409 0.94480 0.95242 0.91556 0.77122 0.95341 0.95481 0.92221 0.91863 0.89879 0.91286 0.88905 0.91568 0.83402 0.91080 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.39 11.83 21.84 0.26 -51.13 16 2 C 0.03 1.56 5.50 85.31 0.47 2.03 16 3 Si 1.00 41.26 29.56 68.60 2.03 43.29 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.57 -33.07 9.54 24.83 0.24 -32.83 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 9 C 0.53 31.83 7.75 86.36 0.67 32.50 16 10 O -0.64 -43.95 15.02 -4.29 -0.06 -44.01 16 11 N -0.75 -34.40 5.29 -467.42 -2.47 -36.87 16 12 C 0.14 5.73 5.07 86.38 0.44 6.17 16 13 C -0.12 -3.21 2.37 -10.74 -0.03 -3.24 16 14 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 15 C -0.11 -2.62 5.29 30.68 0.16 -2.46 16 16 C -0.15 -2.50 6.08 30.65 0.19 -2.31 16 17 C 0.05 0.95 6.55 86.33 0.57 1.51 16 18 N -0.69 -14.54 6.87 -514.01 -3.53 -18.07 16 19 C 0.07 1.83 5.70 86.32 0.49 2.32 16 20 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 21 H 0.39 15.42 7.64 -92.71 -0.71 14.71 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.35 6.33 8.86 -89.70 -0.79 5.53 16 31 H 0.07 1.99 7.20 -2.39 -0.02 1.98 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -75.30 264.99 -0.97 -76.27 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.38 Total: 26.84 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 3.19 Total: 3.69 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.74 Total: -106.07 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.01 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -75.30 -0.97 -76.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258022403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.870 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds