Wall clock time and date at job start Mon Mar 30 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48503 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46866 * 299.99598 * 3 2 1 6 6 H 1.48490 * 109.47254 * 59.99805 * 3 2 1 7 7 C 1.40057 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00213 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99643 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99886 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99517 * 180.02562 * 11 9 7 13 13 H 1.08992 * 108.81914 * 33.48282 * 12 11 9 14 14 C 1.45884 * 108.75751 * 151.91698 * 12 11 9 15 15 C 1.54520 * 111.67234 * 182.25713 * 14 12 11 16 16 C 1.50531 * 108.86317 * 282.74808 * 15 14 12 17 17 C 1.53921 * 112.93435 * 91.75306 * 16 15 14 18 18 N 1.47980 * 113.36042 * 317.73866 * 17 16 15 19 19 C 1.44307 * 113.62884 * 318.19615 * 18 17 16 20 20 H 0.97005 * 119.99732 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00431 * 359.97438 * 11 9 7 22 22 H 1.09004 * 109.03836 * 302.82041 * 14 12 11 23 23 H 1.09000 * 109.03994 * 61.69070 * 14 12 11 24 24 H 1.09003 * 109.57169 * 42.56664 * 15 14 12 25 25 H 1.09007 * 109.56911 * 162.93163 * 15 14 12 26 26 H 1.08995 * 108.79299 * 212.64751 * 16 15 14 27 27 H 1.09000 * 108.78853 * 330.98393 * 16 15 14 28 28 H 1.09003 * 108.70799 * 78.75261 * 17 16 15 29 29 H 1.08995 * 108.71010 * 196.88783 * 17 16 15 30 30 H 1.00906 * 111.06058 * 192.20922 * 18 17 16 31 31 H 1.09002 * 109.69591 * 335.62041 * 19 18 17 32 32 H 1.08996 * 109.69408 * 215.07351 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3462 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8820 2.3964 1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2749 -2.4806 0.0005 10 8 0.0581 -2.4805 -0.0004 11 7 1.9488 -3.6478 0.0016 12 6 1.2161 -4.9164 0.0010 13 1 0.2959 -4.7907 -0.5692 14 6 2.0377 -5.9323 -0.6481 15 6 1.3038 -7.2893 -0.7357 16 6 1.3480 -7.9545 0.6139 17 6 0.1270 -7.6182 1.4887 18 7 -0.2645 -6.1925 1.4265 19 6 0.8559 -5.2834 1.4524 20 1 -0.4850 0.8401 -0.0004 21 1 2.9188 -3.6479 0.0020 22 1 2.2876 -5.5975 -1.6549 23 1 2.9583 -6.0620 -0.0791 24 1 0.2667 -7.1253 -1.0282 25 1 1.7968 -7.9241 -1.4721 26 1 1.3915 -9.0343 0.4719 27 1 2.2500 -7.6328 1.1345 28 1 -0.7159 -8.2269 1.1614 29 1 0.3583 -7.8701 2.5236 30 1 -0.9298 -5.9672 2.1510 31 1 1.7083 -5.7644 1.9322 32 1 0.5851 -4.3823 2.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258069508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:22 Heat of formation + Delta-G solvation = -45.410185 kcal Electronic energy + Delta-G solvation = -14490.719166 eV Core-core repulsion = 12064.604013 eV Total energy + Delta-G solvation = -2426.115154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.89488 -36.64121 -33.70795 -32.76229 -32.19857 -29.73997 -26.27946 -24.98236 -24.35935 -20.29032 -19.95702 -19.11206 -17.07980 -16.39302 -15.39187 -15.10038 -14.44197 -14.04269 -13.94300 -13.37457 -13.01108 -12.55125 -12.32842 -12.09948 -11.48063 -11.32420 -11.03125 -10.89341 -10.60175 -10.54063 -10.38703 -10.15985 -10.14936 -9.94869 -8.81632 -8.09730 -7.49556 -7.32387 -6.12057 -4.57586 3.15809 3.23875 3.28311 4.14042 4.43267 4.66392 4.80916 5.05137 5.08940 5.39876 5.45807 5.57353 5.78241 5.84102 5.88376 5.94982 6.06759 6.12235 6.21592 6.28040 6.47580 6.56272 6.76217 6.99849 7.48832 7.54868 7.76191 8.03455 8.23341 8.41938 9.08736 9.64596 10.67487 10.88161 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065596 B = 0.007151 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.753096 B = 3914.614800 C = 4112.463969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.576 6.576 11 N -0.767 5.767 12 C 0.156 3.844 13 H 0.083 0.917 14 C -0.119 4.119 15 C -0.107 4.107 16 C -0.119 4.119 17 C 0.066 3.934 18 N -0.696 5.696 19 C 0.064 3.936 20 H 0.266 0.734 21 H 0.376 0.624 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.344 0.656 31 H 0.028 0.972 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -11.851 1.788 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.458 6.458 11 N -0.421 5.421 12 C 0.049 3.951 13 H 0.101 0.899 14 C -0.157 4.157 15 C -0.146 4.146 16 C -0.157 4.157 17 C -0.063 4.063 18 N -0.328 5.328 19 C -0.067 4.067 20 H 0.077 0.923 21 H 0.207 0.793 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.162 0.838 31 H 0.046 0.954 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.919 -11.741 1.124 12.150 hybrid contribution 1.228 0.751 1.012 1.760 sum 4.147 -10.989 2.136 11.938 Atomic orbital electron populations 1.70039 1.06994 1.26978 1.35741 1.25699 0.94585 1.00196 0.92698 0.86359 0.80493 0.81978 0.78152 1.18861 1.20205 1.20249 1.20955 0.93544 0.89599 1.54390 0.91578 1.18203 0.87275 0.82513 0.76234 1.90606 1.13969 1.86786 1.54452 1.46345 1.08277 1.05095 1.82428 1.19394 0.96627 0.84213 0.94816 0.89904 1.20837 0.98555 0.95304 1.01008 1.21195 1.01843 0.95535 0.95996 1.21385 0.97786 0.99856 0.96628 1.22201 0.97520 0.89596 0.96951 1.58840 1.17090 1.01911 1.54933 1.22038 0.91312 0.94984 0.98339 0.92279 0.79278 0.91911 0.92891 0.90666 0.92455 0.92005 0.92487 0.91578 0.96072 0.83809 0.95367 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.33 16 9 C 0.55 15.98 7.59 -12.99 -0.10 15.88 16 10 O -0.58 -18.86 14.64 5.20 0.08 -18.78 16 11 N -0.77 -17.51 4.98 -58.04 -0.29 -17.80 16 12 C 0.16 3.12 2.10 -70.79 -0.15 2.97 16 13 H 0.08 1.97 7.43 -51.93 -0.39 1.59 16 14 C -0.12 -1.87 4.70 -29.30 -0.14 -2.01 16 15 C -0.11 -1.44 5.63 -27.17 -0.15 -1.59 16 16 C -0.12 -1.43 5.28 -27.48 -0.15 -1.57 16 17 C 0.07 0.84 6.44 -2.75 -0.02 0.83 16 18 N -0.70 -11.17 6.18 -113.75 -0.70 -11.87 16 19 C 0.06 1.19 5.73 -4.70 -0.03 1.16 16 20 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 21 H 0.38 7.62 8.56 -40.82 -0.35 7.27 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 0.77 7.59 -51.93 -0.39 0.37 16 24 H 0.07 1.12 7.79 -51.93 -0.40 0.71 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 6.65 -51.93 -0.35 0.36 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.34 5.15 8.89 -39.29 -0.35 4.80 16 31 H 0.03 0.47 6.79 -51.93 -0.35 0.12 16 32 H 0.07 1.52 7.98 -51.93 -0.41 1.11 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -33.66 259.53 -7.19 -40.84 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.65 Total: 9.05 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.16 Total: 1.98 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.33 Total: -52.42 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.78 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.66 -7.19 -40.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258069508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.565 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds